SGD-Wiki - User contributions [en]

General S. cerevisiae Information

2018-05-15T18:14:36Z

Gail:

This page has replaced the Virtual Library. See also [[Other_Fungi|other fungi information]].

*Generally speaking:
**[[What_are_yeast?|What are yeast?]]
**Here are some [[Yeast_Images|images]] and [[Yeast_Movies|movies]] of yeast

*The [[Media:ArtOfBrewing.pptx|Art of Brewing]], courtesy of [http://www.millercoors.com/ Miller Brewing Company].

*Information about [http://en.wikipedia.org/wiki/Winemaking winemaking].

*Information about yeast and bread baking, from [http://www.breadworld.com/ Fleischmann's] and [http://www.redstaryeast.com/ Red Star Yeast] companies.

*Information about the yeast-based foods [http://en.wikipedia.org/wiki/Marmite Marmite] and [http://www.vegemite.com.au/ Vegemite].

*An [https://pdfs.semanticscholar.org/c6ea/b8fd0097f680d696f964ea336199c49a7c70.pdf?_ga=2.168381537.1703878422.1510182558-2055231778.1510182558 introduction] to yeast, the most ideal eukaryotic microorganism for biological studies, written by Fred Sherman.

*An updated version of the yeast primer [https://www.urmc.rochester.edu/MediaLibraries/URMCMedia/biochemistry-biophysics/documents/Getting-Started-With-Yeast.pdf Getting Started with Yeast] written by Fred Sherman.

*[http://www.genetics.org/content/197/1/33.full.pdf Budding Yeast for Budding Geneticists: A Primer on the ''Saccharomyces cerevisiae'' Model System] written by Andrea A. Duina, Mary E. Miller, and Jill B. Keeney, published in [http://www.genetics.org Genetics].

*[http://biochemie.web.med.uni-muenchen.de/Yeast_Biol/ Yeast Molecular Biology: A Short Compendium on Basic Features and Novel Aspects] written by Horst Feldmann at the University of Munich

*Download a [https://wiki.yeastgenome.org/images/8/8f/Cherry_1995_PMID_7660459.pdf guide to S.cerevisiae nomenclature], published in [http://www.sciencedirect.com/science/journal/01689525 Trends in Genetics].

*A [[External_Links|list]] of websites with relevance to S. cerevisiae molecular biology and genetics and to general molecular biology.

*Search the [http://www.bio.net/hypermail/yeast/ Yeast BioSci] (a.k.a. BioNet) Electronic Conference

*Usenet group on yeast molecular biology: [http://www.bio.net/hypermail/yeast/ bionet.molbio.yeast]

*Curated publications at SGD describing [http://www.yeastgenome.org/cgi-bin/reference/reference.pl?topic=Industrial%20Applications industrial uses of yeast], such as biofuels, winemaking, brewing.

*Curated publications at SGD addressing [http://www.yeastgenome.org/cgi-bin/reference/reference.pl?topic=Infection%20and%20Antifungals infections and antifungals] and [http://www.yeastgenome.org/cgi-bin/reference/reference.pl?topic=Disease%20Gene%20Related genes associated with diseases]

Main Page

2018-05-15T18:08:52Z

Gail:

[[Image:AwesomeYeast.jpg|700px|center]]
 

= Welcome to the SGD Community Wiki! =

Information, provided '''for''' and '''by''' the yeast community, about the budding yeast Saccharomyces cerevisiae.

* Add information about your favorite gene, including interactions (see [[PRX1|''PRX1'']]), phenotypes (see [[NRG1|''NRG1'']]), mutant phenotypes ([http://wiki.yeastgenome.org/index.php/CommunityW303.html ''rad5-G535R'']) and protein domains (see [[OPY2|''OPY2'']]).

* Share information about your [[Commonly_used_strains|lab strain]], provide links to [[Methods|protocols or methods]], or post [[Positions_in_yeast_labs| new job]] or [[Meetings|upcoming meeting]] announcements.

For newcomers, [[What_are_yeast%3F|learn what makes yeast so awesome]]!

Sharing your information on this wiki is easy! All you need is a SGD wiki account (If you don't have one already, please contact [mailto:sgd-helpdesk@lists.stanford.edu sgd-helpdesk@lists.stanford.edu] to request one).

Return to [[File:SgdHomeLogo200.jpg|link=http://www.yeastgenome.org]]

Main Page

2018-05-15T18:08:41Z

Gail:

[[Image:AwesomeYeast.jpg|700px|center]]
 

= Welcome to the SGD Community Wiki! =

Information, provided '''for''' and '''by''' the yeast community, about the budding yeast Saccharomyces cerevisiae.

* Add information about your favorite gene, including interactions (see [[PRX1|''PRX1'']]), phenotypes (see [[NRG1|''NRG1'']]), mutant phenotypes ([http://wiki.yeastgenome.org/index.php/CommunityW303.html ''rad5-G535R'']) and protein domains (see [[OPY2|''OPY2'']]).

* Share information about your [[Commonly_used_strains|lab strain]], provide links to [[Methods|protocols or methods]], or post [[Positions_in_yeast_labs| new job]] or [[Meetings|upcoming meeting]] announcements.

For newcomers, [[What_are_yeast%3F|learn what makes yeast so awesome]]!

Sharing your information on this wiki is easy! All you need is a SGD wiki account (If you don't have one already, please contact[mailto:sgd-helpdesk@lists.stanford.edu sgd-helpdesk@lists.stanford.edu] to request one).

Return to [[File:SgdHomeLogo200.jpg|link=http://www.yeastgenome.org]]

Historical Systematic Sequence Information

2017-08-28T20:56:45Z

Gail: /* Sequence Information and Updates */

__TOC__
These pages refer to the systematic sequence of S288C prior to Release 64. Before Release 64, there were [[Guidelines_for_changing_systematic_sequence | guidelines for changing systematic sequence]].

= Maps =
[[Original_Sequence_Papers|Original Sequence papers]]

[[Yeast_Mortimer_Maps_-_Edition_12|Mortimer Genetic and Physical Maps - Edition 12]]

[[Combined_Physical_and_Genetic_Maps_of_S._cerevisiae|Combined Physical and Genetics Maps - 1997]]

= Sequence Information and Updates =
[[Systematic_Sequencing_Table]]

[[Details_of_2011_Reference_Sequence_Update|2011 Reference Sequence Update]]

=Chromosomal Features=
[[Modified_Nucleotides_within_RNAs_in_S._cerevisiae|Modified Nucleotides within RNAs in S. cerevisiae]]

Meiotic Double-Stranded Breaks in the Yeast Genome: [[Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Graphic]] | [[Tabular_Form_of_Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Table]]

[[S._cerevisiae_Codon_Usage_Tables|Codon Usage Tables]]

=Reagents=
[[Primer_Set_Sequences| Primer sets for amplifying yeast ORFs]]

[[Commonly_used_auxotrophic_markers|Commonly Used Auxotrophic Markers]]

Historical Systematic Sequence Information

2017-08-28T20:56:35Z

Gail: /* Sequence Information and Updates */

Historical Systematic Sequence Information

2017-08-28T20:56:09Z

Gail: /* Sequence Updates */

__TOC__
These pages refer to the systematic sequence of S288C prior to Release 64. Before Release 64, there were [[Guidelines_for_changing_systematic_sequence | guidelines for changing systematic sequence]].

= Maps =
[[Original_Sequence_Papers|Original Sequence papers]]

[[Yeast_Mortimer_Maps_-_Edition_12|Mortimer Genetic and Physical Maps - Edition 12]]

[[Combined_Physical_and_Genetic_Maps_of_S._cerevisiae|Combined Physical and Genetics Maps - 1997]]

= Sequence Information and Updates =
* [[Systematic_Sequencing_Table]]
* [[Details_of_2011_Reference_Sequence_Update|2011 Reference Sequence Update]]

=Chromosomal Features=
[[Modified_Nucleotides_within_RNAs_in_S._cerevisiae|Modified Nucleotides within RNAs in S. cerevisiae]]

Meiotic Double-Stranded Breaks in the Yeast Genome: [[Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Graphic]] | [[Tabular_Form_of_Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Table]]

[[S._cerevisiae_Codon_Usage_Tables|Codon Usage Tables]]

=Reagents=
[[Primer_Set_Sequences| Primer sets for amplifying yeast ORFs]]

[[Commonly_used_auxotrophic_markers|Commonly Used Auxotrophic Markers]]

MediaWiki:Sidebar

2017-08-28T20:53:53Z

Gail:

Meetings

2017-07-31T17:23:46Z

Gail: /* Upcoming Conferences & Courses */

Meetings that may be of interest to the yeast community are listed below. If you would like to add a conference or meeting to the list, please log in to the wiki. If you do not have a user account, please contact the [http://www.yeastgenome.org/cgi-bin/suggestion SGD helpdesk] and we will gladly create an account for you.

=Upcoming Conferences & Courses =
[http://meetings.cshl.edu/courses.aspx?course=c-yeas&year=17 Yeast Genetics & Genomics Course] 
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 
July 25 - August 14, 2017 
Application Deadline: April 15, 2017 

[http://cpsc.ku.dk/calendar/2017/cpsc-phd-summer-course-2017-synbiosys SYNthetic BIOlogy: From pro- to eukaryotic SYStems (SYNBIOSYS)] 
CPSC PhD course 
August 21 - 25, 2017 
Registration deadline: August 13, 2017. 

[http://www.yeast2017.cz 28th International Conference on Yeast Genetics and Molecular Biology (ICYGMB)] 
Prague Congress Centre, Prague, Czech Republic 
August 27 – September 1, 2017 

[http://www.microbiologysociety.org/event/society-events-and-meetings/focused-meeting-2017-british-yeast-group-meeting-the-versatility-of-yeasts.html British Yeast Group meeting on “The Versatility of Yeasts”, a Microbiology Society Focused Meeting] 
University of Kent, Canterbury, UK 
September 11 - 13, 2017 
Abstract submission deadline: May 22, 2017 

[http://www.genetics-gsa.org/conferences/yeast_meeting.shtml Yeast Genetics Meeting] 
Stanford University, Palo Alto, California 
August 22 – 26, 2018 

=Past Yeast Meetings=
International Conference on Yeast Genetics and Molecular Biology 
:Browse or search abstracts: 
:[http://onlinelibrary.wiley.com/doi/10.1002/yea.v32.s1/issuetoc 2015] (XXVII) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.v30.S1/issuetoc 2013] (XXVI) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1862/abstract 2011] (XXV) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1682/abstract 2009] (XXIV) | [http://www.yeastgenome.org/community/meetings/yeast07/ 2007] (XXIII) | [http://www.yeastgenome.org/community/meetings/yeast05/ 2005] (XXII) | [http://www.yeastgenome.org/community/meetings/yeast03/ 2003] (XXI) | [http://www.yeastgenome.org/community/meetings/yeast01/ 2001] (XX)

Yeast Genetics & Molecular Biology Meeting 
:Browse or search abstracts; view participant lists and photos: 
:[http://wiki.yeastgenome.org/index.php/File:Program_Book_Abstracts_Yeast_2014.pdf 2014 (PDF abstract book)] | [http://www.yeast-meet.org/2012/ 2012] | [http://www.yeast-meet.org/2010/ 2010] | [http://www.yeast-meet.org/2008 2008] | [http://www.yeastgenome.org/community/meetings/yeast06/ 2006] | [http://www.yeastgenome.org/community/meetings/yeast04/ 2004] | [http://www.yeastgenome.org/community/meetings/yeast02/ 2002] | [http://www.yeastgenome.org/community/meetings/yeast00/ 2000] | [http://www.yeastgenome.org/community/meetings/yeast98/ 1998] | [http://www.yeastgenome.org/community/meetings/yeast96/ 1996]

Meetings

2017-05-17T17:46:38Z

Gail: /* Upcoming Conferences & Courses */

Meetings that may be of interest to the yeast community are listed below. If you would like to add a conference or meeting to the list, please log in to the wiki. If you do not have a user account, please contact the [http://www.yeastgenome.org/cgi-bin/suggestion SGD helpdesk] and we will gladly create an account for you.

=Upcoming Conferences & Courses =

[http://www.pombe2017.com 9th International Fission Yeast Meeting] 
The Banff Centre, Banff, Alberta, Canada 
May 14-19, 2017 
Abstract submission deadline extended to March 1, 2017 
Registration deadlines: extended to March 1, 2017 (regular) and April 1, 2017 (late) 

[http://www.yeastlipidconference.com/next-ylc-2017.html 13th Yeast Lipid Conference] 
AgroParisTech Claude Bernard campus, Paris, France 
May 17-19, 2017 

[http://www.microbiologysociety.org/events/event-listing/index.cfm/issy33 ISSY33: Exploring and Engineering Yeasts for Industrial Application] 
University College Cork, Ireland 
June 26-29, 2017 

[http://www.taosciences.it/ssbss/ '''4th INTERNATIONAL SYNTHETIC & SYSTEMS BIOLOGY SUMMER SCHOOL and WORKSHOP'''] 
University of Cambridge, UK 
July 17-21, 2017 
Application and abstract submission deadline: March 31, 2017 

[http://meetings.cshl.edu/courses.aspx?course=c-yeas&year=17 Yeast Genetics & Genomics Course] 
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 
July 25 - August 14, 2017 
Application Deadline: April 15, 2017 

[http://cpsc.ku.dk/calendar/2017/cpsc-phd-summer-course-2017-synbiosys SYNthetic BIOlogy: From pro- to eukaryotic SYStems (SYNBIOSYS)] 
CPSC PhD course 
August 21 - 25, 2017 
Registration deadline: August 13, 2017. 

[http://www.yeast2017.cz 28th International Conference on Yeast Genetics and Molecular Biology (ICYGMB)] 
Prague Congress Centre, Prague, Czech Republic 
August 27 – September 1, 2017 

[http://www.microbiologysociety.org/event/society-events-and-meetings/focused-meeting-2017-british-yeast-group-meeting-the-versatility-of-yeasts.html British Yeast Group meeting on “The Versatility of Yeasts”, a Microbiology Society Focused Meeting] 
University of Kent, Canterbury, UK 
September 11 - 13, 2017 
Abstract submission deadline: May 22, 2017 

=Past Yeast Meetings=
International Conference on Yeast Genetics and Molecular Biology 
:Browse or search abstracts: 
:[http://onlinelibrary.wiley.com/doi/10.1002/yea.v32.s1/issuetoc 2015] (XXVII) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.v30.S1/issuetoc 2013] (XXVI) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1862/abstract 2011] (XXV) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1682/abstract 2009] (XXIV) | [http://www.yeastgenome.org/community/meetings/yeast07/ 2007] (XXIII) | [http://www.yeastgenome.org/community/meetings/yeast05/ 2005] (XXII) | [http://www.yeastgenome.org/community/meetings/yeast03/ 2003] (XXI) | [http://www.yeastgenome.org/community/meetings/yeast01/ 2001] (XX)

Yeast Genetics & Molecular Biology Meeting 
:Browse or search abstracts; view participant lists and photos: 
:[http://wiki.yeastgenome.org/index.php/File:Program_Book_Abstracts_Yeast_2014.pdf 2014 (PDF abstract book)] | [http://www.yeast-meet.org/2012/ 2012] | [http://www.yeast-meet.org/2010/ 2010] | [http://www.yeast-meet.org/2008 2008] | [http://www.yeastgenome.org/community/meetings/yeast06/ 2006] | [http://www.yeastgenome.org/community/meetings/yeast04/ 2004] | [http://www.yeastgenome.org/community/meetings/yeast02/ 2002] | [http://www.yeastgenome.org/community/meetings/yeast00/ 2000] | [http://www.yeastgenome.org/community/meetings/yeast98/ 1998] | [http://www.yeastgenome.org/community/meetings/yeast96/ 1996]

Meetings

2017-05-17T17:45:32Z

Gail: /* Upcoming Conferences & Courses */

Meetings that may be of interest to the yeast community are listed below. If you would like to add a conference or meeting to the list, please log in to the wiki. If you do not have a user account, please contact the [http://www.yeastgenome.org/cgi-bin/suggestion SGD helpdesk] and we will gladly create an account for you.

=Upcoming Conferences & Courses =

[http://www.pombe2017.com 9th International Fission Yeast Meeting] 
The Banff Centre, Banff, Alberta, Canada 
May 14-19, 2017 
Abstract submission deadline extended to March 1, 2017 
Registration deadlines: extended to March 1, 2017 (regular) and April 1, 2017 (late) 

[https://imya12.azuleon.org/welcome.php 12th International Meeting on Yeast Apoptosis] 
Camera di Commercio di Bari, Bari, Italy 
May 14-18, 2017 

[http://www.yeastlipidconference.com/next-ylc-2017.html 13th Yeast Lipid Conference] 
AgroParisTech Claude Bernard campus, Paris, France 
May 17-19, 2017 

[http://www.microbiologysociety.org/events/event-listing/index.cfm/issy33 ISSY33: Exploring and Engineering Yeasts for Industrial Application] 
University College Cork, Ireland 
June 26-29, 2017 

[http://www.taosciences.it/ssbss/ '''4th INTERNATIONAL SYNTHETIC & SYSTEMS BIOLOGY SUMMER SCHOOL and WORKSHOP'''] 
University of Cambridge, UK 
July 17-21, 2017 
Application and abstract submission deadline: March 31, 2017 

[http://meetings.cshl.edu/courses.aspx?course=c-yeas&year=17 Yeast Genetics & Genomics Course] 
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 
July 25 - August 14, 2017 
Application Deadline: April 15, 2017 

[http://cpsc.ku.dk/calendar/2017/cpsc-phd-summer-course-2017-synbiosys SYNthetic BIOlogy: From pro- to eukaryotic SYStems (SYNBIOSYS)] 
CPSC PhD course 
August 21 - 25, 2017 
Registration deadline: 13 August 2017. 

[http://www.yeast2017.cz 28th International Conference on Yeast Genetics and Molecular Biology (ICYGMB)] 
Prague Congress Centre, Prague, Czech Republic 
August 27 – September 1, 2017 

[http://www.microbiologysociety.org/event/society-events-and-meetings/focused-meeting-2017-british-yeast-group-meeting-the-versatility-of-yeasts.html British Yeast Group meeting on “The Versatility of Yeasts”, a Microbiology Society Focused Meeting] 
University of Kent, Canterbury, UK 
September 11 - 13, 2017 
Abstract submission deadline: May 22, 2017 

=Past Yeast Meetings=
International Conference on Yeast Genetics and Molecular Biology 
:Browse or search abstracts: 
:[http://onlinelibrary.wiley.com/doi/10.1002/yea.v32.s1/issuetoc 2015] (XXVII) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.v30.S1/issuetoc 2013] (XXVI) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1862/abstract 2011] (XXV) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1682/abstract 2009] (XXIV) | [http://www.yeastgenome.org/community/meetings/yeast07/ 2007] (XXIII) | [http://www.yeastgenome.org/community/meetings/yeast05/ 2005] (XXII) | [http://www.yeastgenome.org/community/meetings/yeast03/ 2003] (XXI) | [http://www.yeastgenome.org/community/meetings/yeast01/ 2001] (XX)

Yeast Genetics & Molecular Biology Meeting 
:Browse or search abstracts; view participant lists and photos: 
:[http://wiki.yeastgenome.org/index.php/File:Program_Book_Abstracts_Yeast_2014.pdf 2014 (PDF abstract book)] | [http://www.yeast-meet.org/2012/ 2012] | [http://www.yeast-meet.org/2010/ 2010] | [http://www.yeast-meet.org/2008 2008] | [http://www.yeastgenome.org/community/meetings/yeast06/ 2006] | [http://www.yeastgenome.org/community/meetings/yeast04/ 2004] | [http://www.yeastgenome.org/community/meetings/yeast02/ 2002] | [http://www.yeastgenome.org/community/meetings/yeast00/ 2000] | [http://www.yeastgenome.org/community/meetings/yeast98/ 1998] | [http://www.yeastgenome.org/community/meetings/yeast96/ 1996]

Meetings

2017-05-17T17:45:08Z

Gail:

Meetings that may be of interest to the yeast community are listed below. If you would like to add a conference or meeting to the list, please log in to the wiki. If you do not have a user account, please contact the [http://www.yeastgenome.org/cgi-bin/suggestion SGD helpdesk] and we will gladly create an account for you.

=Upcoming Conferences & Courses =

[http://www.pombe2017.com 9th International Fission Yeast Meeting] 
The Banff Centre, Banff, Alberta, Canada 
May 14-19, 2017 
Abstract submission deadline extended to March 1, 2017 
Registration deadlines: extended to March 1, 2017 (regular) and April 1, 2017 (late) 

[https://imya12.azuleon.org/welcome.php 12th International Meeting on Yeast Apoptosis] 
Camera di Commercio di Bari, Bari, Italy 
May 14-18, 2017 

[http://www.yeastlipidconference.com/next-ylc-2017.html 13th Yeast Lipid Conference] 
AgroParisTech Claude Bernard campus, Paris, France 
May 17-19, 2017 

[http://www.microbiologysociety.org/events/event-listing/index.cfm/issy33 ISSY33: Exploring and Engineering Yeasts for Industrial Application] 
University College Cork, Ireland 
June 26-29, 2017 

[http://www.taosciences.it/ssbss/ '''4th INTERNATIONAL SYNTHETIC & SYSTEMS BIOLOGY SUMMER SCHOOL and WORKSHOP'''] 
University of Cambridge, UK 
July 17-21, 2017 
Application and abstract submission deadline: March 31, 2017 

[http://meetings.cshl.edu/courses.aspx?course=c-yeas&year=17 Yeast Genetics & Genomics Course] 
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 
July 25 - August 14, 2017 
Application Deadline: April 15, 2017 

[http://cpsc.ku.dk/calendar/2017/cpsc-phd-summer-course-2017-synbiosys SYNthetic BIOlogy: From pro- to eukaryotic SYStems (SYNBIOSYS)] 
CPSC PhD course 
August 21 - 252017 
Registration deadline: 13 August 2017. 

[http://www.yeast2017.cz 28th International Conference on Yeast Genetics and Molecular Biology (ICYGMB)] 
Prague Congress Centre, Prague, Czech Republic 
August 27 – September 1, 2017 

[http://www.microbiologysociety.org/event/society-events-and-meetings/focused-meeting-2017-british-yeast-group-meeting-the-versatility-of-yeasts.html British Yeast Group meeting on “The Versatility of Yeasts”, a Microbiology Society Focused Meeting] 
University of Kent, Canterbury, UK 
September 11 - 13, 2017 
Abstract submission deadline: May 22, 2017 

=Past Yeast Meetings=
International Conference on Yeast Genetics and Molecular Biology 
:Browse or search abstracts: 
:[http://onlinelibrary.wiley.com/doi/10.1002/yea.v32.s1/issuetoc 2015] (XXVII) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.v30.S1/issuetoc 2013] (XXVI) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1862/abstract 2011] (XXV) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1682/abstract 2009] (XXIV) | [http://www.yeastgenome.org/community/meetings/yeast07/ 2007] (XXIII) | [http://www.yeastgenome.org/community/meetings/yeast05/ 2005] (XXII) | [http://www.yeastgenome.org/community/meetings/yeast03/ 2003] (XXI) | [http://www.yeastgenome.org/community/meetings/yeast01/ 2001] (XX)

Yeast Genetics & Molecular Biology Meeting 
:Browse or search abstracts; view participant lists and photos: 
:[http://wiki.yeastgenome.org/index.php/File:Program_Book_Abstracts_Yeast_2014.pdf 2014 (PDF abstract book)] | [http://www.yeast-meet.org/2012/ 2012] | [http://www.yeast-meet.org/2010/ 2010] | [http://www.yeast-meet.org/2008 2008] | [http://www.yeastgenome.org/community/meetings/yeast06/ 2006] | [http://www.yeastgenome.org/community/meetings/yeast04/ 2004] | [http://www.yeastgenome.org/community/meetings/yeast02/ 2002] | [http://www.yeastgenome.org/community/meetings/yeast00/ 2000] | [http://www.yeastgenome.org/community/meetings/yeast98/ 1998] | [http://www.yeastgenome.org/community/meetings/yeast96/ 1996]

Historical Systematic Sequence Information

2017-04-03T15:06:26Z

Gail:

__TOC__
These pages refer to the systematic sequence of S288C prior to Release 64. Before Release 64, there were [[Guidelines_for_changing_systematic_sequence | guidelines for changing systematic sequence]].

= Maps =
[[Original_Sequence_Papers|Original Sequence papers]]

[[Yeast_Mortimer_Maps_-_Edition_12|Mortimer Genetic and Physical Maps - Edition 12]]

[[Combined_Physical_and_Genetic_Maps_of_S._cerevisiae|Combined Physical and Genetics Maps - 1997]]

= Sequence Updates =
[[Details_of_2011_Reference_Sequence_Update|2011 Reference Sequence Update]]

=Chromosomal Features=
[[Modified_Nucleotides_within_RNAs_in_S._cerevisiae|Modified Nucleotides within RNAs in S. cerevisiae]]

Meiotic Double-Stranded Breaks in the Yeast Genome: [[Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Graphic]] | [[Tabular_Form_of_Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Table]]

[[S._cerevisiae_Codon_Usage_Tables|Codon Usage Tables]]

=Reagents=
[[Primer_Set_Sequences| Primer sets for amplifying yeast ORFs]]

[[Commonly_used_auxotrophic_markers|Commonly Used Auxotrophic Markers]]

Meetings

2016-10-13T19:17:24Z

Gail:

Meetings

2016-08-04T17:00:26Z

Gail:

Meetings that may be of interest to the yeast community are listed below. If you would like to add a conference or meeting to the list, please log in to the wiki. If you do not have a user account, please contact the [http://www.yeastgenome.org/cgi-bin/suggestion SGD helpdesk] and we will gladly create an account for you.

=Upcoming Conferences & Courses =
[http://meetings.cshl.edu/courses.aspx?course=c-yeas&year=16 Yeast Genetics & Genomics Course] 
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 
July 26 - August 15, 2016 
Application Deadline: April 15, 2016 

[http://www.faseb.org/SRC-Microsite/YeastChrom/Home.aspx Yeast Chromosome Structure, Replication and Segregation] 
Snowmass, CO, USA 
July 31 - August 5, 2016 
Early Bird deadline: June 16, 2016 
Last day to register: July 1, 2016 

[http://icy2016.com/ ICY 2016: 14th International Congress on Yeasts] 
Awaji Yumebutai International Conference Center, Hyogo, Japan 
September 11-15, 2016 
Abstract submission and early registration deadline: June 10, 2016 

[http://www.embl.de/training/events/2016/EAE16-01/index.html Experimental Approaches to Evolution and Ecology Using Yeast and Other Model Systems] 
EMBL Heidelberg, Germany 
October 19 - 23, 2016 
Abstract deadline: July 24, 2016 
Registration deadline: August 17, 2016 

[http://www.yeastlipidconference.com/next-ylc-2017.html 13th Yeast Lipid Conference] 
AgroParisTech Claude Bernard campus, Paris, France 
May 17-19, 2017 

=Past Yeast Meetings=
International Conference on Yeast Genetics and Molecular Biology 
:Browse or search abstracts: 
:[http://onlinelibrary.wiley.com/doi/10.1002/yea.v32.s1/issuetoc 2015] (XXVII) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.v30.S1/issuetoc 2013] (XXVI) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1862/abstract 2011] (XXV) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1682/abstract 2009] (XXIV) | [http://www.yeastgenome.org/community/meetings/yeast07/ 2007] (XXIII) | [http://www.yeastgenome.org/community/meetings/yeast05/ 2005] (XXII) | [http://www.yeastgenome.org/community/meetings/yeast03/ 2003] (XXI) | [http://www.yeastgenome.org/community/meetings/yeast01/ 2001] (XX)

Yeast Genetics & Molecular Biology Meeting 
:Browse or search abstracts; view participant lists and photos: 
:[http://wiki.yeastgenome.org/index.php/File:Program_Book_Abstracts_Yeast_2014.pdf 2014 (PDF abstract book)] | [http://www.yeast-meet.org/2012/ 2012] | [http://www.yeast-meet.org/2010/ 2010] | [http://www.yeast-meet.org/2008 2008] | [http://www.yeastgenome.org/community/meetings/yeast06/ 2006] | [http://www.yeastgenome.org/community/meetings/yeast04/ 2004] | [http://www.yeastgenome.org/community/meetings/yeast02/ 2002] | [http://www.yeastgenome.org/community/meetings/yeast00/ 2000] | [http://www.yeastgenome.org/community/meetings/yeast98/ 1998] | [http://www.yeastgenome.org/community/meetings/yeast96/ 1996]

MediaWiki:Sidebar

2016-04-28T14:59:43Z

Gail:

Meetings

2016-02-04T14:51:15Z

Gail:

Meetings that may be of interest to the yeast community are listed below. If you would like to add a conference or meeting to the list, please log in to the wiki. If you do not have a user account, please contact the [http://www.yeastgenome.org/cgi-bin/suggestion SGD helpdesk] and we will gladly create an account for you.

=Upcoming Conferences & Courses =
[http://serym2016.ua.edu 2016 Southeastern Regional Yeast Meeting (SERYM 2016)] 
The University of Alabama, Tuscaloosa, AL, USA 
March 25-27, 2016 
Registration and abstract submission deadline: February 29, 2016 

[http://events.embo.org/16-transcription-yeast/ Gene transcription in yeast: From chromatin to RNA and back] 
Sant Feliu de Guixols, Spain 
June 11-16, 2016 

[http://groups.tecnico.ulisboa.pt/bsrg/pyff6/index.php PYFF6 - 6th Conference on Physiology of Yeast and Filamentous Fungi] 
Lisbon, Portugal 
July 11-14, 2016 

[http://www.genetics2016.org/yeast/index.shtml Yeast Genetics Meeting at TAGC 2016: The Allied Genetics Conference] 
Orlando, FL, USA 
July 13-17, 2016 
Abstract deadline: March 23, 2016 
Early registration deadline: March 23, 2016 

[http://icy2016.com/ ICY 2016: 14th International Congress on Yeasts] 
Awaji Yumebutai International Conference Center, Hyogo, Japan 
September 11-15, 2016 

[http://www.yeastlipidconference.com/next-ylc-2017.html 13th Yeast Lipid Conference] 
Paris, France 
May, 2017 

=Past Yeast Meetings=
International Conference on Yeast Genetics and Molecular Biology 
:Browse or search abstracts: 
:[http://onlinelibrary.wiley.com/doi/10.1002/yea.v32.s1/issuetoc 2015] (XXVII) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.v30.S1/issuetoc 2013] (XXVI) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1862/abstract 2011] (XXV) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1682/abstract 2009] (XXIV) | [http://www.yeastgenome.org/community/meetings/yeast07/ 2007] (XXIII) | [http://www.yeastgenome.org/community/meetings/yeast05/ 2005] (XXII) | [http://www.yeastgenome.org/community/meetings/yeast03/ 2003] (XXI) | [http://www.yeastgenome.org/community/meetings/yeast01/ 2001] (XX)

Yeast Genetics & Molecular Biology Meeting 
:Browse or search abstracts; view participant lists and photos: 
:[http://wiki.yeastgenome.org/index.php/File:Program_Book_Abstracts_Yeast_2014.pdf 2014 (PDF abstract book)] | [http://www.yeast-meet.org/2012/ 2012] | [http://www.yeast-meet.org/2010/ 2010] | [http://www.yeast-meet.org/2008 2008] | [http://www.yeastgenome.org/community/meetings/yeast06/ 2006] | [http://www.yeastgenome.org/community/meetings/yeast04/ 2004] | [http://www.yeastgenome.org/community/meetings/yeast02/ 2002] | [http://www.yeastgenome.org/community/meetings/yeast00/ 2000] | [http://www.yeastgenome.org/community/meetings/yeast98/ 1998] | [http://www.yeastgenome.org/community/meetings/yeast96/ 1996]

YGR204W

2015-12-18T21:04:45Z

Gail: /* Community Commentary */

{{PageTop}}
<protect>
{|{{Prettytable}} align = 'right' width = '200px'
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000003436 YGR204W]
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||''ADE3 ''
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Aliases''' ||'' ''
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Feature type''' || ORF, Verified[[Category:ORF]][[Category:ORF, Verified]]
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates'''
|nowrap| Chr VII:905934..908774
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID''' || S000003436
|}
 
'''Description of YGR204W:''' Cytoplasmic trifunctional enzyme C1-tetrahydrofolate synthase, involved in single carbon metabolism and required for biosynthesis of purines, thymidylate, methionine, and histidine; null mutation causes auxotrophy for adenine and histidine<ref name='S000070200'>Jones EW and Fink GR (1982) Regulation of amino acid and nucleotide biosynthesis in yeast. Pp.181-299 in The Molecular Biology of the Yeast Saccharomyces: Metabolism and Gene Expression, edited by Strathern JN, Jones EW and Broach JR. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press {{SGDpaper|S000070200}} PMID </ref><ref name='S000055086'>McKenzie KQ and Jones EW (1977) Mutants of formyltetrahydrofolate interconversion pathway of Saccharomyces cerevisiae. Genetics 86(1):85-102 {{SGDpaper|S000055086}} PMID 328341</ref><ref name='S000045356'>Song JM and Rabinowitz JC (1993) Function of yeast cytoplasmic C1-tetrahydrofolate synthase. Proc Natl Acad Sci U S A 90(7):2636-40
{{SGDpaper|S000045356}} PMID 8464869</ref>
 
 
 
 
 
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YGR204W

2015-12-18T21:04:25Z

Gail: /* Community Commentary */

{{PageTop}}
<protect>
{|{{Prettytable}} align = 'right' width = '200px'
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000003436 YGR204W]
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||''ADE3 ''
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Aliases''' ||'' ''
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Feature type''' || ORF, Verified[[Category:ORF]][[Category:ORF, Verified]]
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates'''
|nowrap| Chr VII:905934..908774
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID''' || S000003436
|}
 
'''Description of YGR204W:''' Cytoplasmic trifunctional enzyme C1-tetrahydrofolate synthase, involved in single carbon metabolism and required for biosynthesis of purines, thymidylate, methionine, and histidine; null mutation causes auxotrophy for adenine and histidine<ref name='S000070200'>Jones EW and Fink GR (1982) Regulation of amino acid and nucleotide biosynthesis in yeast. Pp.181-299 in The Molecular Biology of the Yeast Saccharomyces: Metabolism and Gene Expression, edited by Strathern JN, Jones EW and Broach JR. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press {{SGDpaper|S000070200}} PMID </ref><ref name='S000055086'>McKenzie KQ and Jones EW (1977) Mutants of formyltetrahydrofolate interconversion pathway of Saccharomyces cerevisiae. Genetics 86(1):85-102 {{SGDpaper|S000055086}} PMID 328341</ref><ref name='S000045356'>Song JM and Rabinowitz JC (1993) Function of yeast cytoplasmic C1-tetrahydrofolate synthase. Proc Natl Acad Sci U S A 90(7):2636-40
{{SGDpaper|S000045356}} PMID 8464869</ref>
 
 
 
 
 
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Career Resources

2015-06-04T03:50:04Z

Gail:

Following is a list of sites that post biology related job openings. Please note that this is not a comprehensive list. Some of these sites may be free (may require registration) for job seekers, job posters or both.

'''Note''': ''Please include the posting date with your entry and remember to remove your entry once the position has been filled; old entries with broken links will be periodically cleaned up.''

* [[Positions in yeast labs]] posted by members of the research community

* Postdoctoral Position Available in Systems Biology at E&J Gallo Winery, Modesto, CA [http://hrsjobs.gallo.com/psp/ert/EJGAPP/PSFT_HR/c/HRS_HRAM.HRS_CE.GBL?Page=HRS_CE_JOB_DTL&Action=A&JobOpeningId=6210&SiteId=1&PostingSeq=1]

* Computational and Systems Biology at Memorial Sloan-Kettering Cancer Center - [http://cbio.mskcc.org/jobs All jobs] Recruitment.

* Technical Director, Enzymes position available through CPL Executive Search http://www.cplsearch.com/technical-director-enzymes/

* Fungal RefSeq curator position at NCBI (posted June 3, 2015), [http://chj.tbe.taleo.net/chj01/ats/careers/requisition.jsp?org=COMPUTERCRAFT&cws=1&rid=114 see ad] for further details.

* Assistant Professor of Yeast Biology; Departments of Viticulture and Enology and Food Science and Technology; University of California, Davis. Apply at https://recruit.ucdavis.edu/; information: Linda Bisson lfbisson@ucdavis.edu; http://wineserver.ucdavis.edu

== Links to other Career Resources ==

*[http://careers.genetics-gsa.org/ Open positions] offered by [http://www.genetics-gsa.org/ Genetics Society of America]

*[http://jobboard.ascb.org/ Career Services] offered by [http://www.ascb.org/ American Society for Cell Biology]

*[http://www.asmcareerconnections.org/home/index.cfm?site_id=756 ASM Career Connections] offered by [http://www.asm.org/ American Society for Microbiology]

*[http://careers.faseb.org/home/index.cfm?site_id=521 Career Resources] offered by [http://www.faseb.org/#sthash.NzYbAjmD.dpbs FASEB]

*[http://www.sdbonline.org/index.php?option=com_jobs&Itemid=36 Job Openings] offered by [http://www.sdbonline.org Society for Developmental Biology]

*[http://sciencecareers.sciencemag.org/ Science Careers] offered by [http://www.sciencemag.org/ Science Magazine Online]

*[http://www.nature.com/naturejobs/science/ Nature Jobs] offered by [http://www.nature.com Nature Online]

*[http://www.biospace.com Career Center] offered by [http://www.biospace.com Biospace.com]

SGD Publications

2015-04-30T17:02:24Z

Gail:

This is a list of publications written by or in collaboration with members of the SGD staff.

#Skrzypek MS, Nash RS (2015) Biocuration at the Saccharomyces Genome Database. Genesis (submitted).
#Song G, Dickins BJ, Demeter J, Engel S, Dunn B, Cherry JM (2015) AGAPE (Automated Genome Analysis PipelinE) for Pan-Genome Analysis of Saccharomyces cerevisiae. PLoS One. 2015 Mar 17;10(3):e0120671. doi: 10.1371/journal.pone.0120671. eCollection 2015.
#Meldal BH, Forner-Martinez O, Costanzo MC, Dana J, Demeter J, Dumousseau M, Dwight SS, Gaulton A, Licata L, Melidoni AN, Ricard-Blum S, Roechert B, Skyzypek MS, Tiwari M, Velankar S, Wong ED, Hermjakob H, Orchard S (2014) The complex portal - an encyclopaedia of macromolecular complexes. Nucleic Acids Res. 43(Database issue):D479-84. doi: 10.1093/nar/gku975. [[media:Nucl._Acids_Res.-2015-Meldal-D479-84.pdf | '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/25313161 '''PMID: 25313161''']
#Chibucos MC, Mungall CJ, Balakrishnan R, Christie KR, Huntley RP, White O, Blake JA, Lewis SE, Giglio M (2014) Standardized description of scientific evidence using the Evidence Ontology (ECO). Database (Oxford) doi: 10.1093/database/bau075 [[media:Database-2014-Chibucos-database-bau075.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/25052702 '''PMID: 25052702''']
#Costanzo MC, Engel SR, Wong ED, Lloyd P, Karra K, Chan ET, Weng S, Paskov KM, Roe GR, Binkley G, Hitz BC, Cherry JM (2014) Saccharomyces Genome Database provides new regulation data. Nucleic Acids Res. 2014 Jan 1;42(1):D717-25. doi: 10.1093/nar/gkt1158. [[media:Costanzo_2013_PMID_24265222.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=24265222 '''PMID: 24265222''']
#Engel SR, Dietrich FS, Fisk DG, Binkley G, Balakrishnan R, Costanzo MC, Dwight SS, Hitz BC, Karra K, Nash RS, Weng S, Wong ED, Lloyd P, Skrzypek MS, Miyasato SR, Simison M, Cherry JM (2013) The reference genome sequence of Saccharomyces cerevisiae: Then and now. Database (Oxford) G3 (Bethesda). 2013 Dec 27. pii: g3.113.008995v1. doi: 10.1534/g3.113.008995. [[media:EngelSR_2013_PMID_24374639.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=24374639 '''PMID: 24374639''']
#Balakrishnan R, Harris MA, Huntley R, Van Auken K, Cherry JM (2013) A guide to best practices for Gene Ontology (GO) manual annotation. Database (Oxford) doi: 10.1093/database/bat054. [[media:Database-2013-Balakrishnan-database-bat054.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/23842463 '''PMID: 23842463''']
#Engel SR, Cherry JM (2013) The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database. Database (Oxford) doi: 10.1093/database/bat012. [[media:Engel_2013_PMID_23487186.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=23487186 '''PMID: 23487186''']
#Wong ED, Karra K, Hitz BC, Hong EL, Cherry JM (2013) The YeastGenome app: the Saccharomyces Genome Database at your fingertips. Database (Oxford) doi: 10.1093/database/bat004. [[media:Wong_2013_PMID_23396302.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=23396302 '''PMID: 23396302''']
#Cherry JM, Hong EL, Amundsen C, Balakrishnan R, Binkley G, Chan ET, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Karra K, Krieger CJ, Miyasato SR, Nash RS, Park J, Skrzypek MS, Simison M, Weng S, Wong ED (2012) Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Res. Jan;40(Database issue):D700-5. [[media:Cherry_2012_PMID_22110037.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22110037 '''PMID: 22110037''']
#Balakrishnan R, Park J, Karra K, Hitz BC, Binkley G, Hong EL, Sullivan J, Micklem G, Cherry JM (2012) YeastMine - An integrated data warehouse for S. cerevisiae data as a multi-purpose tool-kit. Database (Oxford) doi: 10.1093/database/bar062. [[media:Balakrishnan_2012_PMID_22434830.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22434830 '''PMID: 22434830''']
#Chan ET, Cherry JM (2012) Considerations for creating and annotating the budding yeast Genome Map at SGD: A progress report. Database (Oxford) doi: 10.1093/database/bar057. [[media:Chan_2012_PMID_22434826.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22434826 '''PMID: 22434826''']
#Park J, Costanzo MC, Balakrishnan R, Cherry JM, Hong EL (2012) CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations. Database (Oxford) doi: 10.1093/database/bas001. [[media:Park_2012_PMID_22434836.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22434836 '''PMID: 22434836''']
#Costanzo MC, Park J, Balakrishnan R, Cherry JM, Hong EL (2011) Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study. Database (Oxford) doi: 10.1093/database/bar004. [[media:Costanzo_2011_PMID_21411447.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=21411447 '''PMID: 21411447''']
#Engel SR, Balakrishnan R, Binkley G, Christie KR, Costanzo MC, Dwight SS, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Krieger CJ, Livstone MS, Miyasato SR, Nash R, Oughtred R, Park J, Skrzypek MS, Weng S, Wong ED, Dolinski K, Botstein D, Cherry JM. (2010) Saccharomyces Genome Database provides mutant phenotype data. Nucleic Acids Res. 2010 Jan;38(Database issue):D433-6. [[media:Engel_2009_PMID_19906697.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=19906697 '''PMID: 19906697''']
#Costanzo MC, Skrzypek MS, Nash R, Wong E, Binkley G, Engel SR, Hitz B, Hong EL, Cherry JM, and the Saccharomyces Genome Database Project. (2009) New mutant phenotype data curation system in the Saccharomyces Genome Database. Database; doi: 10.1093/database/bap001. [[media:Costanzo_2009_PMID_20157474.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=20157474 '''PMID: 20157474''']
#Christie KR, Hong EL, Cherry JM. (2009) Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns. Trends Microbiol. 2009 Jul;17(7):286-94. [[media:Christie_2009_PMID_19577472.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=19577472 '''PMID: 19577472''']
#Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM. (2008) Gene Ontology annotations at SGD: new data sources and annotation methods. Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. [[media:Hong_2008_PMID_17982175.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=17982175 '''PMID: 17982175''']
#Fisk DG, Ball CA, Dolinski K, Engel SR, Hong EL, Issel-Tarver L, Schwartz K, Sethuraman A, Botstein D, Michael Cherry J (2006) Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. Yeast 23(12):857-65. [[media:Fisk_2006_PMID_17001629.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=17001629 '''PMID: 17001629''']
#Nash R, Weng S, Hitz B, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Livstone MS, Oughtred R, Park J, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Dolinski K, Botstein D, Cherry JM (2007) Expanded protein information at SGD: new pages and proteome browser. Nucleic Acids Res 35(Database issue):D468-71. [[media:Nash_2007_PMID_17142221.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=17142221 '''PMID: 17142221''']
#Hirschman JE, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hong EL, Livstone MS, Nash R, Park J, Oughtred R, Skrzypek M, Starr B, Theesfeld CL, Williams J, Andrada R, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Thanawala MK, Weng S, Dolinski K, Botstein D, Cherry JM (2006) Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome. Nucleic Acids Res 34(Database issue):D442-5. [[media:Hirschman_2006_PMID_16381907.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=16381907 '''PMID: 16381907''']
#Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Nash R, Oughtred R, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Sethuraman A, Weng S, Botstein D, Cherry JM. Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD). Nucleic Acids Res. 2005 Jan 1; 33 Database Issue:D374-7. [[media:Balakrishnan_2005_PMID_15608219.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=15608219 '''PMID: 15608219''']
#Dwight SS, Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Engel SR, Feierbach B, Fisk DG, Hirschman J, Hong EL, Issel-Tarver L, Nash RS, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Weng S, Botstein D, Cherry JM. Saccharomyces genome database: underlying principles and organisation. Brief Bioinform. 2004 Mar; 5(1):9-22. [[media:Dwight_2004_PMID_15153302.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=15153302 '''PMID: 15153302''']
#Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, Hong EL, Issel-Tarver L, Nash R, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Botstein D, Cherry JM. Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res. 2004 Jan 1; 32 Database issue:D311-4. [[media:Christie_2004_PMID_14681421.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=14681421 '''PMID: 14681421''']
#Weng S, Dong Q, Balakrishnan R, Christie K, Costanzo M, Dolinski K, Dwight SS, Engel S, Fisk DG, Hong E, Issel-Tarver L, Sethuraman A, Theesfeld C, Andrada R, Binkley G, Lane C, Schroeder M, Botstein D, Cherry JM. Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins. Nucleic Acids Res. 2003 Jan 1; 31(1):216-8. [[media:Weng_2003_PMID_12519985.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=12519985 '''PMID: 12519985''']
#Issel-Tarver L, Christie KR, Dolinski K, Andrada R, Balakrishnan R, Ball CA, Binkley G, Dong S, Dwight SS, Fisk DG, Harris M, Schroeder M, Sethuraman A, Tse K, Weng S, Botstein D, Cherry JM. Saccharomyces Genome Database. Methods Enzymol. 2002 350:329-46. [[media:Issel-Tarver_2002_PMID_12073322.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=12073322 '''PMID: 12073322''']
#Dwight SS, Harris MA, Dolinski K, Ball CA, Binkley G, Christie KR, Fisk DG, Issel-Tarver L, Schroeder M, Sherlock G, Sethuraman A, Weng S, Botstein D, Cherry JM. Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Res. 2002 Jan 1; 30(1):69-72. [[media:Dwight_2002_PMID_11752257.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=11752257 '''PMID: 11752257''']
#Ball CA, Jin H, Sherlock G, Weng S, Matese JC, Andrada R, Binkley G, Dolinski K, Dwight SS, Harris MA, Issel-Tarver L, Schroeder M, Botstein D, Cherry JM. Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data. Nucleic Acids Res. 2001 Jan 1;29(1):80-1. [[media:Ball_2001_PMID_11125055.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=11125055 '''PMID: 11125055''']
#Ball CA, Dolinski K, Dwight SS, Harris MA, Issel-Tarver L, Kasarskis A, Scafe CR, Sherlock G, Binkley G, Jin H, Kaloper M, Orr SD, Schroeder M, Weng S, Zhu Y, Botstein D, Cherry JM. Nucleic Acids Res 2000 28(1):77-80. Integrating functional genomic information into the saccharomyces genome database. [[media:Ball_2000_PMID_10592186.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=10592186 '''PMID: 10592186''']
#Chervitz SA, Hester ET, Ball CA, Dolinski K, Dwight SS, Harris MA, Juvik G, Malekian A, Roberts S, Roe T, Scafe C, Schroeder M, Sherlock M, Weng S, Zhu Y, Cherry JM, Botstein D. Nucleic Acids Res 1999 27(1):74-8. Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure. [[media:Chervitz_1999_PMID_9847146.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9847146 '''PMID: 9847146''']
#Chervitz SA, Aravind L, Sherlock G, Ball CA, Koonin EV, Dwight SS, Harris MA, Dolinski K, Mohr S, Smith T, Weng S, Cherry JM, Botstein D. Science 1998 282(5396):2022-8. Comparison of the complete protein sets of worm and yeast: orthology and divergence. [[media:Chervitz_1998_PMID_9851918.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9851918 '''PMID: 9851918''']
#Dolinski K, Ball CA, Chervitz SA, Dwight SS, Harris MA, Roberts S, Roe T, Cherry JM, Botstein D. Yeast 1998 Dec;14(16):1453-69. Expanding yeast knowledge online. [[media:Dolinski_1998_PMID_9885151.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9885151 '''PMID: 9885151''']
#Cherry JM, Adler C, Ball C, Chervitz SA, Dwight SS, Hester ET, Jia Y, Juvik G, Roe T, Schroeder M, Weng S, Botstein D. Nucleic Acids Res 1998 26(1):73-80. SGD: Saccharomyces Genome Database. [[media:Cherry_1998_PMID_9399804.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9399804 '''PMID: 9399804''']
#Botstein D, Chervitz SA, Cherry JM. Science 1997 277(5330):1259-1260. Yeast as a model organism. [[media:Botstein_1997_PMID_9297238.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9297238 '''PMID: 9297238''']
#Botstein D, Cherry JM. Proc Natl Acad Sci U S A 1997 94(11):5506-5507. Molecular linguistics: extracting information from gene and protein sequences. [[media:Botstein_1997_PMID_9159100.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9159100 '''PMID: 9159100''']
#Cherry JM, Ball C, Weng S, Juvik G, Schmidt R, Adler C, Dunn B, Dwight S, Riles L, Mortimer RK, Botstein D. Nature 1997 387(6632 Suppl):67-73. Genetic and physical maps of Saccharomyces cerevisiae. [[media:Cherry_1997_PMID_9169866.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9169866 '''PMID: 9169866''']
#Cherry, JM. Trends Genet 1995 11-12. Genetic nomenclature guide. Saccharomyces cerevisiae. [[media:Cherry_1995_PMID_7660459.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=7660459 '''PMID: 7660459''']

SGD Publications

2015-04-09T21:58:04Z

Gail:

#Skrzypek MS, Nash RS (2015) Biocuration at the Saccharomyces Genome Database. Genesis (submitted).
#Song G, Dickins BJ, Demeter J, Engel S, Dunn B, Cherry JM (2015) AGAPE (Automated Genome Analysis PipelinE) for Pan-Genome Analysis of Saccharomyces cerevisiae. PLoS One. 2015 Mar 17;10(3):e0120671. doi: 10.1371/journal.pone.0120671. eCollection 2015.
#Meldal BH, Forner-Martinez O, Costanzo MC, Dana J, Demeter J, Dumousseau M, Dwight SS, Gaulton A, Licata L, Melidoni AN, Ricard-Blum S, Roechert B, Skyzypek MS, Tiwari M, Velankar S, Wong ED, Hermjakob H, Orchard S (2014) The complex portal - an encyclopaedia of macromolecular complexes. Nucleic Acids Res. 43(Database issue):D479-84. doi: 10.1093/nar/gku975. [[media:Nucl._Acids_Res.-2015-Meldal-D479-84.pdf | '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/25313161 '''PMID: 25313161''']
#Chibucos MC, Mungall CJ, Balakrishnan R, Christie KR, Huntley RP, White O, Blake JA, Lewis SE, Giglio M (2014) Standardized description of scientific evidence using the Evidence Ontology (ECO). Database (Oxford) doi: 10.1093/database/bau075 [[media:Database-2014-Chibucos-database-bau075.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/25052702 '''PMID: 25052702''']
#Costanzo MC, Engel SR, Wong ED, Lloyd P, Karra K, Chan ET, Weng S, Paskov KM, Roe GR, Binkley G, Hitz BC, Cherry JM (2014) Saccharomyces Genome Database provides new regulation data. Nucleic Acids Res. 2014 Jan 1;42(1):D717-25. doi: 10.1093/nar/gkt1158. [[media:Costanzo_2013_PMID_24265222.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=24265222 '''PMID: 24265222''']
#Engel SR, Dietrich FS, Fisk DG, Binkley G, Balakrishnan R, Costanzo MC, Dwight SS, Hitz BC, Karra K, Nash RS, Weng S, Wong ED, Lloyd P, Skrzypek MS, Miyasato SR, Simison M, Cherry JM (2013) The reference genome sequence of Saccharomyces cerevisiae: Then and now. Database (Oxford) G3 (Bethesda). 2013 Dec 27. pii: g3.113.008995v1. doi: 10.1534/g3.113.008995. [[media:EngelSR_2013_PMID_24374639.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=24374639 '''PMID: 24374639''']
#Balakrishnan R, Harris MA, Huntley R, Van Auken K, Cherry JM (2013) A guide to best practices for Gene Ontology (GO) manual annotation. Database (Oxford) doi: 10.1093/database/bat054. [[media:Database-2013-Balakrishnan-database-bat054.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/23842463 '''PMID: 23842463''']
#Engel SR, Cherry JM (2013) The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database. Database (Oxford) doi: 10.1093/database/bat012. [[media:Engel_2013_PMID_23487186.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=23487186 '''PMID: 23487186''']
#Wong ED, Karra K, Hitz BC, Hong EL, Cherry JM (2013) The YeastGenome app: the Saccharomyces Genome Database at your fingertips. Database (Oxford) doi: 10.1093/database/bat004. [[media:Wong_2013_PMID_23396302.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=23396302 '''PMID: 23396302''']
#Cherry JM, Hong EL, Amundsen C, Balakrishnan R, Binkley G, Chan ET, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Karra K, Krieger CJ, Miyasato SR, Nash RS, Park J, Skrzypek MS, Simison M, Weng S, Wong ED (2012) Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Res. Jan;40(Database issue):D700-5. [[media:Cherry_2012_PMID_22110037.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22110037 '''PMID: 22110037''']
#Balakrishnan R, Park J, Karra K, Hitz BC, Binkley G, Hong EL, Sullivan J, Micklem G, Cherry JM (2012) YeastMine - An integrated data warehouse for S. cerevisiae data as a multi-purpose tool-kit. Database (Oxford) doi: 10.1093/database/bar062. [[media:Balakrishnan_2012_PMID_22434830.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22434830 '''PMID: 22434830''']
#Chan ET, Cherry JM (2012) Considerations for creating and annotating the budding yeast Genome Map at SGD: A progress report. Database (Oxford) doi: 10.1093/database/bar057. [[media:Chan_2012_PMID_22434826.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22434826 '''PMID: 22434826''']
#Park J, Costanzo MC, Balakrishnan R, Cherry JM, Hong EL (2012) CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations. Database (Oxford) doi: 10.1093/database/bas001. [[media:Park_2012_PMID_22434836.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22434836 '''PMID: 22434836''']
#Costanzo MC, Park J, Balakrishnan R, Cherry JM, Hong EL (2011) Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study. Database (Oxford) doi: 10.1093/database/bar004. [[media:Costanzo_2011_PMID_21411447.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=21411447 '''PMID: 21411447''']
#Engel SR, Balakrishnan R, Binkley G, Christie KR, Costanzo MC, Dwight SS, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Krieger CJ, Livstone MS, Miyasato SR, Nash R, Oughtred R, Park J, Skrzypek MS, Weng S, Wong ED, Dolinski K, Botstein D, Cherry JM. (2010) Saccharomyces Genome Database provides mutant phenotype data. Nucleic Acids Res. 2010 Jan;38(Database issue):D433-6. [[media:Engel_2009_PMID_19906697.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=19906697 '''PMID: 19906697''']
#Costanzo MC, Skrzypek MS, Nash R, Wong E, Binkley G, Engel SR, Hitz B, Hong EL, Cherry JM, and the Saccharomyces Genome Database Project. (2009) New mutant phenotype data curation system in the Saccharomyces Genome Database. Database; doi: 10.1093/database/bap001. [[media:Costanzo_2009_PMID_20157474.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=20157474 '''PMID: 20157474''']
#Christie KR, Hong EL, Cherry JM. (2009) Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns. Trends Microbiol. 2009 Jul;17(7):286-94. [[media:Christie_2009_PMID_19577472.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=19577472 '''PMID: 19577472''']
#Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM. (2008) Gene Ontology annotations at SGD: new data sources and annotation methods. Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. [[media:Hong_2008_PMID_17982175.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=17982175 '''PMID: 17982175''']
#Fisk DG, Ball CA, Dolinski K, Engel SR, Hong EL, Issel-Tarver L, Schwartz K, Sethuraman A, Botstein D, Michael Cherry J (2006) Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. Yeast 23(12):857-65. [[media:Fisk_2006_PMID_17001629.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=17001629 '''PMID: 17001629''']
#Nash R, Weng S, Hitz B, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Livstone MS, Oughtred R, Park J, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Dolinski K, Botstein D, Cherry JM (2007) Expanded protein information at SGD: new pages and proteome browser. Nucleic Acids Res 35(Database issue):D468-71. [[media:Nash_2007_PMID_17142221.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=17142221 '''PMID: 17142221''']
#Hirschman JE, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hong EL, Livstone MS, Nash R, Park J, Oughtred R, Skrzypek M, Starr B, Theesfeld CL, Williams J, Andrada R, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Thanawala MK, Weng S, Dolinski K, Botstein D, Cherry JM (2006) Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome. Nucleic Acids Res 34(Database issue):D442-5. [[media:Hirschman_2006_PMID_16381907.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=16381907 '''PMID: 16381907''']
#Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Nash R, Oughtred R, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Sethuraman A, Weng S, Botstein D, Cherry JM. Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD). Nucleic Acids Res. 2005 Jan 1; 33 Database Issue:D374-7. [[media:Balakrishnan_2005_PMID_15608219.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=15608219 '''PMID: 15608219''']
#Dwight SS, Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Engel SR, Feierbach B, Fisk DG, Hirschman J, Hong EL, Issel-Tarver L, Nash RS, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Weng S, Botstein D, Cherry JM. Saccharomyces genome database: underlying principles and organisation. Brief Bioinform. 2004 Mar; 5(1):9-22. [[media:Dwight_2004_PMID_15153302.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=15153302 '''PMID: 15153302''']
#Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, Hong EL, Issel-Tarver L, Nash R, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Botstein D, Cherry JM. Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res. 2004 Jan 1; 32 Database issue:D311-4. [[media:Christie_2004_PMID_14681421.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=14681421 '''PMID: 14681421''']
#Weng S, Dong Q, Balakrishnan R, Christie K, Costanzo M, Dolinski K, Dwight SS, Engel S, Fisk DG, Hong E, Issel-Tarver L, Sethuraman A, Theesfeld C, Andrada R, Binkley G, Lane C, Schroeder M, Botstein D, Cherry JM. Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins. Nucleic Acids Res. 2003 Jan 1; 31(1):216-8. [[media:Weng_2003_PMID_12519985.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=12519985 '''PMID: 12519985''']
#Issel-Tarver L, Christie KR, Dolinski K, Andrada R, Balakrishnan R, Ball CA, Binkley G, Dong S, Dwight SS, Fisk DG, Harris M, Schroeder M, Sethuraman A, Tse K, Weng S, Botstein D, Cherry JM. Saccharomyces Genome Database. Methods Enzymol. 2002 350:329-46. [[media:Issel-Tarver_2002_PMID_12073322.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=12073322 '''PMID: 12073322''']
#Dwight SS, Harris MA, Dolinski K, Ball CA, Binkley G, Christie KR, Fisk DG, Issel-Tarver L, Schroeder M, Sherlock G, Sethuraman A, Weng S, Botstein D, Cherry JM. Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Res. 2002 Jan 1; 30(1):69-72. [[media:Dwight_2002_PMID_11752257.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=11752257 '''PMID: 11752257''']
#Ball CA, Jin H, Sherlock G, Weng S, Matese JC, Andrada R, Binkley G, Dolinski K, Dwight SS, Harris MA, Issel-Tarver L, Schroeder M, Botstein D, Cherry JM. Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data. Nucleic Acids Res. 2001 Jan 1;29(1):80-1. [[media:Ball_2001_PMID_11125055.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=11125055 '''PMID: 11125055''']
#Ball CA, Dolinski K, Dwight SS, Harris MA, Issel-Tarver L, Kasarskis A, Scafe CR, Sherlock G, Binkley G, Jin H, Kaloper M, Orr SD, Schroeder M, Weng S, Zhu Y, Botstein D, Cherry JM. Nucleic Acids Res 2000 28(1):77-80. Integrating functional genomic information into the saccharomyces genome database. [[media:Ball_2000_PMID_10592186.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=10592186 '''PMID: 10592186''']
#Chervitz SA, Hester ET, Ball CA, Dolinski K, Dwight SS, Harris MA, Juvik G, Malekian A, Roberts S, Roe T, Scafe C, Schroeder M, Sherlock M, Weng S, Zhu Y, Cherry JM, Botstein D. Nucleic Acids Res 1999 27(1):74-8. Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure. [[media:Chervitz_1999_PMID_9847146.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9847146 '''PMID: 9847146''']
#Chervitz SA, Aravind L, Sherlock G, Ball CA, Koonin EV, Dwight SS, Harris MA, Dolinski K, Mohr S, Smith T, Weng S, Cherry JM, Botstein D. Science 1998 282(5396):2022-8. Comparison of the complete protein sets of worm and yeast: orthology and divergence. [[media:Chervitz_1998_PMID_9851918.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9851918 '''PMID: 9851918''']
#Dolinski K, Ball CA, Chervitz SA, Dwight SS, Harris MA, Roberts S, Roe T, Cherry JM, Botstein D. Yeast 1998 Dec;14(16):1453-69. Expanding yeast knowledge online. [[media:Dolinski_1998_PMID_9885151.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9885151 '''PMID: 9885151''']
#Cherry JM, Adler C, Ball C, Chervitz SA, Dwight SS, Hester ET, Jia Y, Juvik G, Roe T, Schroeder M, Weng S, Botstein D. Nucleic Acids Res 1998 26(1):73-80. SGD: Saccharomyces Genome Database. [[media:Cherry_1998_PMID_9399804.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9399804 '''PMID: 9399804''']
#Botstein D, Chervitz SA, Cherry JM. Science 1997 277(5330):1259-1260. Yeast as a model organism. [[media:Botstein_1997_PMID_9297238.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9297238 '''PMID: 9297238''']
#Botstein D, Cherry JM. Proc Natl Acad Sci U S A 1997 94(11):5506-5507. Molecular linguistics: extracting information from gene and protein sequences. [[media:Botstein_1997_PMID_9159100.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9159100 '''PMID: 9159100''']
#Cherry JM, Ball C, Weng S, Juvik G, Schmidt R, Adler C, Dunn B, Dwight S, Riles L, Mortimer RK, Botstein D. Nature 1997 387(6632 Suppl):67-73. Genetic and physical maps of Saccharomyces cerevisiae. [[media:Cherry_1997_PMID_9169866.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9169866 '''PMID: 9169866''']
#Cherry, JM. Trends Genet 1995 11-12. Genetic nomenclature guide. Saccharomyces cerevisiae. [[media:Cherry_1995_PMID_7660459.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=7660459 '''PMID: 7660459''']

MediaWiki:Sidebar

2015-03-20T18:04:53Z

Gail:

SGD Publications

2015-03-20T18:00:24Z

Gail:

#Meldal BH, Forner-Martinez O, Costanzo MC, Dana J, Demeter J, Dumousseau M, Dwight SS, Gaulton A, Licata L, Melidoni AN, Ricard-Blum S, Roechert B, Skyzypek MS, Tiwari M, Velankar S, Wong ED, Hermjakob H, Orchard S (2014) The complex portal - an encyclopaedia of macromolecular complexes. Nucleic Acids Res. 43(Database issue):D479-84. doi: 10.1093/nar/gku975. [[media:Nucl._Acids_Res.-2015-Meldal-D479-84.pdf | '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/25313161 '''PMID: 25313161''']
#Chibucos MC, Mungall CJ, Balakrishnan R, Christie KR, Huntley RP, White O, Blake JA, Lewis SE, Giglio M (2014) Standardized description of scientific evidence using the Evidence Ontology (ECO). Database (Oxford) doi: 10.1093/database/bau075 [[media:Database-2014-Chibucos-database-bau075.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/25052702 '''PMID: 25052702''']
#Costanzo MC, Engel SR, Wong ED, Lloyd P, Karra K, Chan ET, Weng S, Paskov KM, Roe GR, Binkley G, Hitz BC, Cherry JM (2014) Saccharomyces Genome Database provides new regulation data. Nucleic Acids Res. 2014 Jan 1;42(1):D717-25. doi: 10.1093/nar/gkt1158. [[media:Costanzo_2013_PMID_24265222.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=24265222 '''PMID: 24265222''']
#Engel SR, Dietrich FS, Fisk DG, Binkley G, Balakrishnan R, Costanzo MC, Dwight SS, Hitz BC, Karra K, Nash RS, Weng S, Wong ED, Lloyd P, Skrzypek MS, Miyasato SR, Simison M, Cherry JM (2013) The reference genome sequence of Saccharomyces cerevisiae: Then and now. Database (Oxford) G3 (Bethesda). 2013 Dec 27. pii: g3.113.008995v1. doi: 10.1534/g3.113.008995. [[media:EngelSR_2013_PMID_24374639.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=24374639 '''PMID: 24374639''']
#Balakrishnan R, Harris MA, Huntley R, Van Auken K, Cherry JM (2013) A guide to best practices for Gene Ontology (GO) manual annotation. Database (Oxford) doi: 10.1093/database/bat054. [[media:Database-2013-Balakrishnan-database-bat054.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/23842463 '''PMID: 23842463''']
#Engel SR, Cherry JM (2013) The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database. Database (Oxford) doi: 10.1093/database/bat012. [[media:Engel_2013_PMID_23487186.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=23487186 '''PMID: 23487186''']
#Wong ED, Karra K, Hitz BC, Hong EL, Cherry JM (2013) The YeastGenome app: the Saccharomyces Genome Database at your fingertips. Database (Oxford) doi: 10.1093/database/bat004. [[media:Wong_2013_PMID_23396302.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=23396302 '''PMID: 23396302''']
#Cherry JM, Hong EL, Amundsen C, Balakrishnan R, Binkley G, Chan ET, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Karra K, Krieger CJ, Miyasato SR, Nash RS, Park J, Skrzypek MS, Simison M, Weng S, Wong ED (2012) Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Res. Jan;40(Database issue):D700-5. [[media:Cherry_2012_PMID_22110037.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22110037 '''PMID: 22110037''']
#Balakrishnan R, Park J, Karra K, Hitz BC, Binkley G, Hong EL, Sullivan J, Micklem G, Cherry JM (2012) YeastMine - An integrated data warehouse for S. cerevisiae data as a multi-purpose tool-kit. Database (Oxford) doi: 10.1093/database/bar062. [[media:Balakrishnan_2012_PMID_22434830.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22434830 '''PMID: 22434830''']
#Chan ET, Cherry JM (2012) Considerations for creating and annotating the budding yeast Genome Map at SGD: A progress report. Database (Oxford) doi: 10.1093/database/bar057. [[media:Chan_2012_PMID_22434826.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22434826 '''PMID: 22434826''']
#Park J, Costanzo MC, Balakrishnan R, Cherry JM, Hong EL (2012) CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations. Database (Oxford) doi: 10.1093/database/bas001. [[media:Park_2012_PMID_22434836.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22434836 '''PMID: 22434836''']
#Costanzo MC, Park J, Balakrishnan R, Cherry JM, Hong EL (2011) Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study. Database (Oxford) doi: 10.1093/database/bar004. [[media:Costanzo_2011_PMID_21411447.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=21411447 '''PMID: 21411447''']
#Engel SR, Balakrishnan R, Binkley G, Christie KR, Costanzo MC, Dwight SS, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Krieger CJ, Livstone MS, Miyasato SR, Nash R, Oughtred R, Park J, Skrzypek MS, Weng S, Wong ED, Dolinski K, Botstein D, Cherry JM. (2010) Saccharomyces Genome Database provides mutant phenotype data. Nucleic Acids Res. 2010 Jan;38(Database issue):D433-6. [[media:Engel_2009_PMID_19906697.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=19906697 '''PMID: 19906697''']
#Costanzo MC, Skrzypek MS, Nash R, Wong E, Binkley G, Engel SR, Hitz B, Hong EL, Cherry JM, and the Saccharomyces Genome Database Project. (2009) New mutant phenotype data curation system in the Saccharomyces Genome Database. Database; doi: 10.1093/database/bap001. [[media:Costanzo_2009_PMID_20157474.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=20157474 '''PMID: 20157474''']
#Christie KR, Hong EL, Cherry JM. (2009) Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns. Trends Microbiol. 2009 Jul;17(7):286-94. [[media:Christie_2009_PMID_19577472.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=19577472 '''PMID: 19577472''']
#Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM. (2008) Gene Ontology annotations at SGD: new data sources and annotation methods. Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. [[media:Hong_2008_PMID_17982175.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=17982175 '''PMID: 17982175''']
#Fisk DG, Ball CA, Dolinski K, Engel SR, Hong EL, Issel-Tarver L, Schwartz K, Sethuraman A, Botstein D, Michael Cherry J (2006) Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. Yeast 23(12):857-65. [[media:Fisk_2006_PMID_17001629.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=17001629 '''PMID: 17001629''']
#Nash R, Weng S, Hitz B, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Livstone MS, Oughtred R, Park J, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Dolinski K, Botstein D, Cherry JM (2007) Expanded protein information at SGD: new pages and proteome browser. Nucleic Acids Res 35(Database issue):D468-71. [[media:Nash_2007_PMID_17142221.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=17142221 '''PMID: 17142221''']
#Hirschman JE, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hong EL, Livstone MS, Nash R, Park J, Oughtred R, Skrzypek M, Starr B, Theesfeld CL, Williams J, Andrada R, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Thanawala MK, Weng S, Dolinski K, Botstein D, Cherry JM (2006) Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome. Nucleic Acids Res 34(Database issue):D442-5. [[media:Hirschman_2006_PMID_16381907.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=16381907 '''PMID: 16381907''']
#Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Nash R, Oughtred R, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Sethuraman A, Weng S, Botstein D, Cherry JM. Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD). Nucleic Acids Res. 2005 Jan 1; 33 Database Issue:D374-7. [[media:Balakrishnan_2005_PMID_15608219.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=15608219 '''PMID: 15608219''']
#Dwight SS, Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Engel SR, Feierbach B, Fisk DG, Hirschman J, Hong EL, Issel-Tarver L, Nash RS, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Weng S, Botstein D, Cherry JM. Saccharomyces genome database: underlying principles and organisation. Brief Bioinform. 2004 Mar; 5(1):9-22. [[media:Dwight_2004_PMID_15153302.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=15153302 '''PMID: 15153302''']
#Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, Hong EL, Issel-Tarver L, Nash R, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Botstein D, Cherry JM. Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res. 2004 Jan 1; 32 Database issue:D311-4. [[media:Christie_2004_PMID_14681421.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=14681421 '''PMID: 14681421''']
#Weng S, Dong Q, Balakrishnan R, Christie K, Costanzo M, Dolinski K, Dwight SS, Engel S, Fisk DG, Hong E, Issel-Tarver L, Sethuraman A, Theesfeld C, Andrada R, Binkley G, Lane C, Schroeder M, Botstein D, Cherry JM. Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins. Nucleic Acids Res. 2003 Jan 1; 31(1):216-8. [[media:Weng_2003_PMID_12519985.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=12519985 '''PMID: 12519985''']
#Issel-Tarver L, Christie KR, Dolinski K, Andrada R, Balakrishnan R, Ball CA, Binkley G, Dong S, Dwight SS, Fisk DG, Harris M, Schroeder M, Sethuraman A, Tse K, Weng S, Botstein D, Cherry JM. Saccharomyces Genome Database. Methods Enzymol. 2002 350:329-46. [[media:Issel-Tarver_2002_PMID_12073322.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=12073322 '''PMID: 12073322''']
#Dwight SS, Harris MA, Dolinski K, Ball CA, Binkley G, Christie KR, Fisk DG, Issel-Tarver L, Schroeder M, Sherlock G, Sethuraman A, Weng S, Botstein D, Cherry JM. Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Res. 2002 Jan 1; 30(1):69-72. [[media:Dwight_2002_PMID_11752257.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=11752257 '''PMID: 11752257''']
#Ball CA, Jin H, Sherlock G, Weng S, Matese JC, Andrada R, Binkley G, Dolinski K, Dwight SS, Harris MA, Issel-Tarver L, Schroeder M, Botstein D, Cherry JM. Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data. Nucleic Acids Res. 2001 Jan 1;29(1):80-1. [[media:Ball_2001_PMID_11125055.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=11125055 '''PMID: 11125055''']
#Ball CA, Dolinski K, Dwight SS, Harris MA, Issel-Tarver L, Kasarskis A, Scafe CR, Sherlock G, Binkley G, Jin H, Kaloper M, Orr SD, Schroeder M, Weng S, Zhu Y, Botstein D, Cherry JM. Nucleic Acids Res 2000 28(1):77-80. Integrating functional genomic information into the saccharomyces genome database. [[media:Ball_2000_PMID_10592186.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=10592186 '''PMID: 10592186''']
#Chervitz SA, Hester ET, Ball CA, Dolinski K, Dwight SS, Harris MA, Juvik G, Malekian A, Roberts S, Roe T, Scafe C, Schroeder M, Sherlock M, Weng S, Zhu Y, Cherry JM, Botstein D. Nucleic Acids Res 1999 27(1):74-8. Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure. [[media:Chervitz_1999_PMID_9847146.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9847146 '''PMID: 9847146''']
#Chervitz SA, Aravind L, Sherlock G, Ball CA, Koonin EV, Dwight SS, Harris MA, Dolinski K, Mohr S, Smith T, Weng S, Cherry JM, Botstein D. Science 1998 282(5396):2022-8. Comparison of the complete protein sets of worm and yeast: orthology and divergence. [[media:Chervitz_1998_PMID_9851918.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9851918 '''PMID: 9851918''']
#Dolinski K, Ball CA, Chervitz SA, Dwight SS, Harris MA, Roberts S, Roe T, Cherry JM, Botstein D. Yeast 1998 Dec;14(16):1453-69. Expanding yeast knowledge online. [[media:Dolinski_1998_PMID_9885151.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9885151 '''PMID: 9885151''']
#Cherry JM, Adler C, Ball C, Chervitz SA, Dwight SS, Hester ET, Jia Y, Juvik G, Roe T, Schroeder M, Weng S, Botstein D. Nucleic Acids Res 1998 26(1):73-80. SGD: Saccharomyces Genome Database. [[media:Cherry_1998_PMID_9399804.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9399804 '''PMID: 9399804''']
#Botstein D, Chervitz SA, Cherry JM. Science 1997 277(5330):1259-1260. Yeast as a model organism. [[media:Botstein_1997_PMID_9297238.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9297238 '''PMID: 9297238''']
#Botstein D, Cherry JM. Proc Natl Acad Sci U S A 1997 94(11):5506-5507. Molecular linguistics: extracting information from gene and protein sequences. [[media:Botstein_1997_PMID_9159100.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9159100 '''PMID: 9159100''']
#Cherry JM, Ball C, Weng S, Juvik G, Schmidt R, Adler C, Dunn B, Dwight S, Riles L, Mortimer RK, Botstein D. Nature 1997 387(6632 Suppl):67-73. Genetic and physical maps of Saccharomyces cerevisiae. [[media:Cherry_1997_PMID_9169866.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9169866 '''PMID: 9169866''']
#Cherry, JM. Trends Genet 1995 11-12. Genetic nomenclature guide. Saccharomyces cerevisiae. [[media:Cherry_1995_PMID_7660459.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=7660459 '''PMID: 7660459''']

SGD Publications

2015-03-20T17:59:27Z

Gail:

[[Category:References]]
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#Engel SR, Dietrich FS, Fisk DG, Binkley G, Balakrishnan R, Costanzo MC, Dwight SS, Hitz BC, Karra K, Nash RS, Weng S, Wong ED, Lloyd P, Skrzypek MS, Miyasato SR, Simison M, Cherry JM (2013) The reference genome sequence of Saccharomyces cerevisiae: Then and now. Database (Oxford) G3 (Bethesda). 2013 Dec 27. pii: g3.113.008995v1. doi: 10.1534/g3.113.008995. [[media:EngelSR_2013_PMID_24374639.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=24374639 '''PMID: 24374639''']
#Balakrishnan R, Harris MA, Huntley R, Van Auken K, Cherry JM (2013) A guide to best practices for Gene Ontology (GO) manual annotation. Database (Oxford) doi: 10.1093/database/bat054. [[media:Database-2013-Balakrishnan-database-bat054.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/23842463 '''PMID: 23842463''']
#Engel SR, Cherry JM (2013) The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database. Database (Oxford) doi: 10.1093/database/bat012. [[media:Engel_2013_PMID_23487186.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=23487186 '''PMID: 23487186''']
#Wong ED, Karra K, Hitz BC, Hong EL, Cherry JM (2013) The YeastGenome app: the Saccharomyces Genome Database at your fingertips. Database (Oxford) doi: 10.1093/database/bat004. [[media:Wong_2013_PMID_23396302.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=23396302 '''PMID: 23396302''']
#Cherry JM, Hong EL, Amundsen C, Balakrishnan R, Binkley G, Chan ET, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Karra K, Krieger CJ, Miyasato SR, Nash RS, Park J, Skrzypek MS, Simison M, Weng S, Wong ED (2012) Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Res. Jan;40(Database issue):D700-5. [[media:Cherry_2012_PMID_22110037.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22110037 '''PMID: 22110037''']
#Balakrishnan R, Park J, Karra K, Hitz BC, Binkley G, Hong EL, Sullivan J, Micklem G, Cherry JM (2012) YeastMine - An integrated data warehouse for S. cerevisiae data as a multi-purpose tool-kit. Database (Oxford) doi: 10.1093/database/bar062. [[media:Balakrishnan_2012_PMID_22434830.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22434830 '''PMID: 22434830''']
#Chan ET, Cherry JM (2012) Considerations for creating and annotating the budding yeast Genome Map at SGD: A progress report. Database (Oxford) doi: 10.1093/database/bar057. [[media:Chan_2012_PMID_22434826.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22434826 '''PMID: 22434826''']
#Park J, Costanzo MC, Balakrishnan R, Cherry JM, Hong EL (2012) CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations. Database (Oxford) doi: 10.1093/database/bas001. [[media:Park_2012_PMID_22434836.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=22434836 '''PMID: 22434836''']
#Costanzo MC, Park J, Balakrishnan R, Cherry JM, Hong EL (2011) Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study. Database (Oxford) doi: 10.1093/database/bar004. [[media:Costanzo_2011_PMID_21411447.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=21411447 '''PMID: 21411447''']
#Engel SR, Balakrishnan R, Binkley G, Christie KR, Costanzo MC, Dwight SS, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Krieger CJ, Livstone MS, Miyasato SR, Nash R, Oughtred R, Park J, Skrzypek MS, Weng S, Wong ED, Dolinski K, Botstein D, Cherry JM. (2010) Saccharomyces Genome Database provides mutant phenotype data. Nucleic Acids Res. 2010 Jan;38(Database issue):D433-6. [[media:Engel_2009_PMID_19906697.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=19906697 '''PMID: 19906697''']
#Costanzo MC, Skrzypek MS, Nash R, Wong E, Binkley G, Engel SR, Hitz B, Hong EL, Cherry JM, and the Saccharomyces Genome Database Project. (2009) New mutant phenotype data curation system in the Saccharomyces Genome Database. Database; doi: 10.1093/database/bap001. [[media:Costanzo_2009_PMID_20157474.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=20157474 '''PMID: 20157474''']
#Christie KR, Hong EL, Cherry JM. (2009) Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns. Trends Microbiol. 2009 Jul;17(7):286-94. [[media:Christie_2009_PMID_19577472.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=19577472 '''PMID: 19577472''']
#Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM. (2008) Gene Ontology annotations at SGD: new data sources and annotation methods. Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. [[media:Hong_2008_PMID_17982175.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=17982175 '''PMID: 17982175''']
#Fisk DG, Ball CA, Dolinski K, Engel SR, Hong EL, Issel-Tarver L, Schwartz K, Sethuraman A, Botstein D, Michael Cherry J (2006) Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. Yeast 23(12):857-65. [[media:Fisk_2006_PMID_17001629.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=17001629 '''PMID: 17001629''']
#Nash R, Weng S, Hitz B, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Livstone MS, Oughtred R, Park J, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Dolinski K, Botstein D, Cherry JM (2007) Expanded protein information at SGD: new pages and proteome browser. Nucleic Acids Res 35(Database issue):D468-71. [[media:Nash_2007_PMID_17142221.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=17142221 '''PMID: 17142221''']
#Hirschman JE, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hong EL, Livstone MS, Nash R, Park J, Oughtred R, Skrzypek M, Starr B, Theesfeld CL, Williams J, Andrada R, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Thanawala MK, Weng S, Dolinski K, Botstein D, Cherry JM (2006) Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome. Nucleic Acids Res 34(Database issue):D442-5. [[media:Hirschman_2006_PMID_16381907.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=16381907 '''PMID: 16381907''']
#Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Nash R, Oughtred R, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Sethuraman A, Weng S, Botstein D, Cherry JM. Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD). Nucleic Acids Res. 2005 Jan 1; 33 Database Issue:D374-7. [[media:Balakrishnan_2005_PMID_15608219.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=15608219 '''PMID: 15608219''']
#Dwight SS, Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Engel SR, Feierbach B, Fisk DG, Hirschman J, Hong EL, Issel-Tarver L, Nash RS, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Weng S, Botstein D, Cherry JM. Saccharomyces genome database: underlying principles and organisation. Brief Bioinform. 2004 Mar; 5(1):9-22. [[media:Dwight_2004_PMID_15153302.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=15153302 '''PMID: 15153302''']
#Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, Hong EL, Issel-Tarver L, Nash R, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Botstein D, Cherry JM. Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res. 2004 Jan 1; 32 Database issue:D311-4. [[media:Christie_2004_PMID_14681421.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=14681421 '''PMID: 14681421''']
#Weng S, Dong Q, Balakrishnan R, Christie K, Costanzo M, Dolinski K, Dwight SS, Engel S, Fisk DG, Hong E, Issel-Tarver L, Sethuraman A, Theesfeld C, Andrada R, Binkley G, Lane C, Schroeder M, Botstein D, Cherry JM. Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins. Nucleic Acids Res. 2003 Jan 1; 31(1):216-8. [[media:Weng_2003_PMID_12519985.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=12519985 '''PMID: 12519985''']
#Issel-Tarver L, Christie KR, Dolinski K, Andrada R, Balakrishnan R, Ball CA, Binkley G, Dong S, Dwight SS, Fisk DG, Harris M, Schroeder M, Sethuraman A, Tse K, Weng S, Botstein D, Cherry JM. Saccharomyces Genome Database. Methods Enzymol. 2002 350:329-46. [[media:Issel-Tarver_2002_PMID_12073322.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=12073322 '''PMID: 12073322''']
#Dwight SS, Harris MA, Dolinski K, Ball CA, Binkley G, Christie KR, Fisk DG, Issel-Tarver L, Schroeder M, Sherlock G, Sethuraman A, Weng S, Botstein D, Cherry JM. Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Res. 2002 Jan 1; 30(1):69-72. [[media:Dwight_2002_PMID_11752257.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=11752257 '''PMID: 11752257''']
#Ball CA, Jin H, Sherlock G, Weng S, Matese JC, Andrada R, Binkley G, Dolinski K, Dwight SS, Harris MA, Issel-Tarver L, Schroeder M, Botstein D, Cherry JM. Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data. Nucleic Acids Res. 2001 Jan 1;29(1):80-1. [[media:Ball_2001_PMID_11125055.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=11125055 '''PMID: 11125055''']
#Ball CA, Dolinski K, Dwight SS, Harris MA, Issel-Tarver L, Kasarskis A, Scafe CR, Sherlock G, Binkley G, Jin H, Kaloper M, Orr SD, Schroeder M, Weng S, Zhu Y, Botstein D, Cherry JM. Nucleic Acids Res 2000 28(1):77-80. Integrating functional genomic information into the saccharomyces genome database. [[media:Ball_2000_PMID_10592186.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=10592186 '''PMID: 10592186''']
#Chervitz SA, Hester ET, Ball CA, Dolinski K, Dwight SS, Harris MA, Juvik G, Malekian A, Roberts S, Roe T, Scafe C, Schroeder M, Sherlock M, Weng S, Zhu Y, Cherry JM, Botstein D. Nucleic Acids Res 1999 27(1):74-8. Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure. [[media:Chervitz_1999_PMID_9847146.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9847146 '''PMID: 9847146''']
#Chervitz SA, Aravind L, Sherlock G, Ball CA, Koonin EV, Dwight SS, Harris MA, Dolinski K, Mohr S, Smith T, Weng S, Cherry JM, Botstein D. Science 1998 282(5396):2022-8. Comparison of the complete protein sets of worm and yeast: orthology and divergence. [[media:Chervitz_1998_PMID_9851918.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9851918 '''PMID: 9851918''']
#Dolinski K, Ball CA, Chervitz SA, Dwight SS, Harris MA, Roberts S, Roe T, Cherry JM, Botstein D. Yeast 1998 Dec;14(16):1453-69. Expanding yeast knowledge online. [[media:Dolinski_1998_PMID_9885151.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9885151 '''PMID: 9885151''']
#Cherry JM, Adler C, Ball C, Chervitz SA, Dwight SS, Hester ET, Jia Y, Juvik G, Roe T, Schroeder M, Weng S, Botstein D. Nucleic Acids Res 1998 26(1):73-80. SGD: Saccharomyces Genome Database. [[media:Cherry_1998_PMID_9399804.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9399804 '''PMID: 9399804''']
#Botstein D, Chervitz SA, Cherry JM. Science 1997 277(5330):1259-1260. Yeast as a model organism. [[media:Botstein_1997_PMID_9297238.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9297238 '''PMID: 9297238''']
#Botstein D, Cherry JM. Proc Natl Acad Sci U S A 1997 94(11):5506-5507. Molecular linguistics: extracting information from gene and protein sequences. [[media:Botstein_1997_PMID_9159100.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9159100 '''PMID: 9159100''']
#Cherry JM, Ball C, Weng S, Juvik G, Schmidt R, Adler C, Dunn B, Dwight S, Riles L, Mortimer RK, Botstein D. Nature 1997 387(6632 Suppl):67-73. Genetic and physical maps of Saccharomyces cerevisiae. [[media:Cherry_1997_PMID_9169866.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=9169866 '''PMID: 9169866''']
#Cherry, JM. Trends Genet 1995 11-12. Genetic nomenclature guide. Saccharomyces cerevisiae. [[media:Cherry_1995_PMID_7660459.pdf| '''Full-Text PDF''']] | [http://www.ncbi.nlm.nih.gov/pubmed/?term=7660459 '''PMID: 7660459''']

MediaWiki:Sitenotice

2014-11-18T03:57:37Z

Gail: Blanked the page

MediaWiki:Sitenotice

2014-11-17T20:57:22Z

Gail:

<blockquote style="background-color: #FCF8E3;
border: 1px solid #FBEED5;
border-radius: 4px 4px 4px 4px;
color: #c06253;
margin-bottom: 20px;
padding: 8px 35px 8px 14px;
text-shadow: 0 1px 0 rgba(255, 255, 255, 0.5);
padding-bottom: 14px;
padding-top: 14px; font-weight: bold;">
<big>NOTE! The SGD Wiki will be unavailable on Monday, November 17, 2014 from 4:00-5:00 pm PST for maintenance.</big>
</blockquote>

Meetings

2014-11-06T17:48:41Z

Gail: /* Past Yeast Meetings */

Meetings

2014-11-06T17:47:32Z

Gail:

SGD Newsletter Archives

2014-11-06T17:22:48Z

Gail:

[[Category:Newsletter]]
SGD publishes four newsletters each year. This page contains links to the SGD Newsletters that have been released, listed in chronological order. Click on a date to see the newsletter published for that quarter.

{| width="50%" border="1"
|-
| '''2014'''
| [[SGD_Quarterly_Newsletter,_Spring_2014| 2014-4-17]]
| [[SGD_Quarterly_Newsletter,_Summer_2014| 2014-7-23]]
| [[SGD_Quarterly_Newsletter,_Fall_2014|2014-10-15]]
|
|- bgcolor="E6E6FA"
| '''2013'''
| [[SGD_Quarterly_Newsletter,_Summer_2013| 2013-6-10]]
| [[SGD_Quarterly_Newsletter,_Winter_2013| 2013-12-16]]
|
|
|-
| '''2012'''
| [[SGD_Quarterly_Newsletter,_Winter_2012| 2012-1-27]]
| [[SGD_Quarterly_Newsletter,_Spring_2012| 2012-4-28]]
| [[SGD_Quarterly_Newsletter,_Summer_2012| 2012-8-22]]
| [[SGD_Quarterly_Newsletter,_Fall_2012| 2012-12-13]]
|- bgcolor="E6E6FA"
| '''2011'''
| [[SGD_Quarterly_Newsletter,_Winter_2011| 2011-2-18]]
| [[SGD_Quarterly_Newsletter,_Spring_2011| 2011-5-5]]
| [[SGD_Quarterly_Newsletter,_Summer_2011| 2011-8-11]]
|
|-
| '''2010'''
| [[SGD_Quarterly_Newsletter,_Winter_2010| 2010-1-29]]
| [[SGD_Quarterly_Newsletter,_Spring_2010| 2010-4-29]]
| [[SGD_Quarterly_Newsletter,_Summer_2010| 2010-7-22]]
| [[SGD_Quarterly_Newsletter,_Fall_2010| 2010-11-1]]
|- bgcolor="E6E6FA"
| '''2009'''
| [[SGD_Quarterly_Newsletter,_Winter_2009| 2009-2-3]]
| [[SGD_Quarterly_Newsletter,_Spring_2009| 2009-5-1]]
| [[SGD_Quarterly_Newsletter,_Summer_2009| 2009-8-4]]
| [[SGD_Quarterly_Newsletter,_Fall_2009| 2009-11-6]]
|-
| '''2008'''
| [[SGD_Quarterly_Newsletter,_Winter_2008| 2008-1-31]]
| [[SGD_Quarterly_Newsletter,_Spring_2008| 2008-4-30]]
| [[SGD_Quarterly_Newsletter,_Summer_2008| 2008-7-31]]
| [[SGD_Quarterly_Newsletter,_Fall_2008| 2008-11-3]]
|- bgcolor="E6E6FA"
| '''2007'''
| [[SGD_Quarterly_Newsletter,_Winter_2007| 2007-1-29]]
| [[SGD_Quarterly_Newsletter,_Spring_2007| 2007-5-7]]
| [[SGD_Quarterly_Newsletter,_Summer_2007| 2007-7-30]]
| [[SGD_Quarterly_Newsletter,_Fall_2007| 2007-11-8]]
|-
| '''2006'''
| [[SGD_Quarterly_Newsletter,_Winter_2006| 2006-2-2]]
| [[SGD_Quarterly_Newsletter,_Spring_2006| 2006-5-1]]
| [[SGD_Quarterly_Newsletter,_Summer_2006| 2006-7-20]]
| [[SGD_Quarterly_Newsletter,_Fall_2006| 2006-11-1]]
|- bgcolor="E6E6FA"
| '''2005'''
| [[SGD_Quarterly_Newsletter,_Winter_2005| 2005-1-31]]
| [[SGD_Quarterly_Newsletter,_Spring_2005| 2005-4-28]]
| [[SGD_Quarterly_Newsletter,_Summer_2005| 2005-7-29]]
| [[SGD_Quarterly_Newsletter,_Fall_2005| 2005-10-24]]
|-
| '''2004'''
| [[SGD_Quarterly_Newsletter,_Winter_2004| 2004-1-30]]
| [[SGD_Quarterly_Newsletter,_Spring_2004| 2004-4-26]]
| [[SGD_Quarterly_Newsletter,_Summer_2004| 2004-7-23]]
| [[SGD_Quarterly_Newsletter,_Fall_2004| 2004-11-18]]
|- bgcolor="E6E6FA"
| '''2003'''
| [[SGD_Quarterly_Newsletter,_Winter_2003| 2003-1-31]]
| [[SGD_Quarterly_Newsletter,_Spring_2003| 2003-4-28]]
| [[SGD_Quarterly_Newsletter,_Summer_2003| 2003-8-4]]
| [[SGD_Quarterly_Newsletter,_Fall_2003| 2003-10-31]]
|-
|}

SGD Newsletter Archives

2014-11-06T17:22:30Z

Gail:

[[Category:Newsletter]]
SGD publishes four newsletters each year. This page contains links to the SGD Newsletters that have been released, listed in chronological order. Click on a date to see the newsletter published for that quarter.

{| width="50%" border="1"
|-
| '''2014'''
| [[SGD_Quarterly_Newsletter,_Spring_2014| 2014-4-17]]
| [[SGD_Quarterly_Newsletter,_Summer_2014| 2014-7-23]]
| [[GD_Quarterly_Newsletter,_Fall_2014|2014-10-15]]
|
|- bgcolor="E6E6FA"
| '''2013'''
| [[SGD_Quarterly_Newsletter,_Summer_2013| 2013-6-10]]
| [[SGD_Quarterly_Newsletter,_Winter_2013| 2013-12-16]]
|
|
|-
| '''2012'''
| [[SGD_Quarterly_Newsletter,_Winter_2012| 2012-1-27]]
| [[SGD_Quarterly_Newsletter,_Spring_2012| 2012-4-28]]
| [[SGD_Quarterly_Newsletter,_Summer_2012| 2012-8-22]]
| [[SGD_Quarterly_Newsletter,_Fall_2012| 2012-12-13]]
|- bgcolor="E6E6FA"
| '''2011'''
| [[SGD_Quarterly_Newsletter,_Winter_2011| 2011-2-18]]
| [[SGD_Quarterly_Newsletter,_Spring_2011| 2011-5-5]]
| [[SGD_Quarterly_Newsletter,_Summer_2011| 2011-8-11]]
|
|-
| '''2010'''
| [[SGD_Quarterly_Newsletter,_Winter_2010| 2010-1-29]]
| [[SGD_Quarterly_Newsletter,_Spring_2010| 2010-4-29]]
| [[SGD_Quarterly_Newsletter,_Summer_2010| 2010-7-22]]
| [[SGD_Quarterly_Newsletter,_Fall_2010| 2010-11-1]]
|- bgcolor="E6E6FA"
| '''2009'''
| [[SGD_Quarterly_Newsletter,_Winter_2009| 2009-2-3]]
| [[SGD_Quarterly_Newsletter,_Spring_2009| 2009-5-1]]
| [[SGD_Quarterly_Newsletter,_Summer_2009| 2009-8-4]]
| [[SGD_Quarterly_Newsletter,_Fall_2009| 2009-11-6]]
|-
| '''2008'''
| [[SGD_Quarterly_Newsletter,_Winter_2008| 2008-1-31]]
| [[SGD_Quarterly_Newsletter,_Spring_2008| 2008-4-30]]
| [[SGD_Quarterly_Newsletter,_Summer_2008| 2008-7-31]]
| [[SGD_Quarterly_Newsletter,_Fall_2008| 2008-11-3]]
|- bgcolor="E6E6FA"
| '''2007'''
| [[SGD_Quarterly_Newsletter,_Winter_2007| 2007-1-29]]
| [[SGD_Quarterly_Newsletter,_Spring_2007| 2007-5-7]]
| [[SGD_Quarterly_Newsletter,_Summer_2007| 2007-7-30]]
| [[SGD_Quarterly_Newsletter,_Fall_2007| 2007-11-8]]
|-
| '''2006'''
| [[SGD_Quarterly_Newsletter,_Winter_2006| 2006-2-2]]
| [[SGD_Quarterly_Newsletter,_Spring_2006| 2006-5-1]]
| [[SGD_Quarterly_Newsletter,_Summer_2006| 2006-7-20]]
| [[SGD_Quarterly_Newsletter,_Fall_2006| 2006-11-1]]
|- bgcolor="E6E6FA"
| '''2005'''
| [[SGD_Quarterly_Newsletter,_Winter_2005| 2005-1-31]]
| [[SGD_Quarterly_Newsletter,_Spring_2005| 2005-4-28]]
| [[SGD_Quarterly_Newsletter,_Summer_2005| 2005-7-29]]
| [[SGD_Quarterly_Newsletter,_Fall_2005| 2005-10-24]]
|-
| '''2004'''
| [[SGD_Quarterly_Newsletter,_Winter_2004| 2004-1-30]]
| [[SGD_Quarterly_Newsletter,_Spring_2004| 2004-4-26]]
| [[SGD_Quarterly_Newsletter,_Summer_2004| 2004-7-23]]
| [[SGD_Quarterly_Newsletter,_Fall_2004| 2004-11-18]]
|- bgcolor="E6E6FA"
| '''2003'''
| [[SGD_Quarterly_Newsletter,_Winter_2003| 2003-1-31]]
| [[SGD_Quarterly_Newsletter,_Spring_2003| 2003-4-28]]
| [[SGD_Quarterly_Newsletter,_Summer_2003| 2003-8-4]]
| [[SGD_Quarterly_Newsletter,_Fall_2003| 2003-10-31]]
|-
|}

Meetings

2014-10-23T14:31:55Z

Gail: /* Past Yeast Meetings */

Meetings that may be of interest to the yeast community are listed below. If you would like to add a conference or meeting to the list, please log in to the wiki. If you do not have a user account, please contact the [http://www.yeastgenome.org/cgi-bin/suggestion SGD helpdesk] and we will gladly create an account for you.

=Upcoming Conferences & Courses =

[http://www.issy31.com/ 31st International Specialised Symposium on Yeast] 
Vipava and Nova Gorica, Slovenia 
October 9-12, 2014

EMBL Conference [http://www.embl.de/training/events/2014/EAE14-01/index.html Experimental Approaches to Evolution and Ecology using Yeast & other Model Systems] 
EMBL Heidelberg, Germany 
October 12-15, 2014

Young Life Scientists' Symposium 2014: [http://yls2014.sciencesconf.org/ DNA Damage Response in Physiology and Disease] 
Rennes, France 
October 24, 2014 
Abstract deadline, September 15, 2014; Registration deadline, October 10, 2014

[http://www.genetics-gsa.org/fungal/2015/ 28th Fungal Genetics Conference] 
Pacific Grove, CA 
March 17-22, 2015

[http://biocuration2015.tilsi.org/ Biocuration 2015] 
Beijing, China 
April 23-26, 2015

[http://www.taosciences.it/ssbss2015/ Synthetic and Systems Biology Summer School: Biology meets Engineering and Computer Science - 2nd Edition] 
Taormina, Sicily, Italy 
July 5-9, 2015 
Student Application and Oral/Poster Submission deadline: February 15, 2015

ICYGMB Conference (YEAST 2015): 27th International Conference on Yeast Genetics and Molecular Biology 
[http://www.tr3ntino.it/en/trentinos-holiday-areas/valsugana-lagorai/levico-terme.html Levico Terme], Italy 
September 7-12, 2015 
Download flyer: [[File:ICYGMB_2015.pdf]]

[http://www.genetics2016.org/ TAGC 2016: The Allied Genetics Conference] 
Orlando, FL, USA 
July 13-17, 2016 

=Past Yeast Meetings=
International Conference on Yeast Genetics and Molecular Biology 
:Browse or search abstracts: 
:[http://onlinelibrary.wiley.com/doi/10.1002/yea.v30.S1/issuetoc 2013] (XXVI) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1862/abstract 2011] (XXV) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1682/abstract 2009] (XXIV) | [http://www.yeastgenome.org/community/meetings/yeast07/ 2007] (XXIII) | [http://www.yeastgenome.org/community/meetings/yeast05/ 2005] (XXII) | [http://www.yeastgenome.org/community/meetings/yeast03/ 2003] (XXI) | [http://www.yeastgenome.org/community/meetings/yeast01/ 2001] (XX)

Yeast Genetics & Molecular Biology Meeting 
:Browse or search abstracts; view participant lists and photos: 
:[http://wiki.yeastgenome.org/index.php/File:Program_Book_Abstracts_Yeast_2014.pdf 2014 (download PDF abstract book)] | [http://www.yeast-meet.org/2012/ 2012] | [http://www.yeast-meet.org/2010/ 2010] | [http://www.yeast-meet.org/2008 2008] | [http://www.yeastgenome.org/community/meetings/yeast06/ 2006] | [http://www.yeastgenome.org/community/meetings/yeast04/ 2004] | [http://www.yeastgenome.org/community/meetings/yeast02/ 2002] | [http://www.yeastgenome.org/community/meetings/yeast00/ 2000] | [http://www.yeastgenome.org/community/meetings/yeast98/ 1998] | [http://www.yeastgenome.org/community/meetings/yeast96/ 1996]

Meetings

2014-10-23T14:29:10Z

Gail: /* Past Yeast Meetings */

Meetings that may be of interest to the yeast community are listed below. If you would like to add a conference or meeting to the list, please log in to the wiki. If you do not have a user account, please contact the [http://www.yeastgenome.org/cgi-bin/suggestion SGD helpdesk] and we will gladly create an account for you.

=Upcoming Conferences & Courses =

[http://www.issy31.com/ 31st International Specialised Symposium on Yeast] 
Vipava and Nova Gorica, Slovenia 
October 9-12, 2014

EMBL Conference [http://www.embl.de/training/events/2014/EAE14-01/index.html Experimental Approaches to Evolution and Ecology using Yeast & other Model Systems] 
EMBL Heidelberg, Germany 
October 12-15, 2014

Young Life Scientists' Symposium 2014: [http://yls2014.sciencesconf.org/ DNA Damage Response in Physiology and Disease] 
Rennes, France 
October 24, 2014 
Abstract deadline, September 15, 2014; Registration deadline, October 10, 2014

[http://www.genetics-gsa.org/fungal/2015/ 28th Fungal Genetics Conference] 
Pacific Grove, CA 
March 17-22, 2015

[http://biocuration2015.tilsi.org/ Biocuration 2015] 
Beijing, China 
April 23-26, 2015

[http://www.taosciences.it/ssbss2015/ Synthetic and Systems Biology Summer School: Biology meets Engineering and Computer Science - 2nd Edition] 
Taormina, Sicily, Italy 
July 5-9, 2015 
Student Application and Oral/Poster Submission deadline: February 15, 2015

ICYGMB Conference (YEAST 2015): 27th International Conference on Yeast Genetics and Molecular Biology 
[http://www.tr3ntino.it/en/trentinos-holiday-areas/valsugana-lagorai/levico-terme.html Levico Terme], Italy 
September 7-12, 2015 
Download flyer: [[File:ICYGMB_2015.pdf]]

[http://www.genetics2016.org/ TAGC 2016: The Allied Genetics Conference] 
Orlando, FL, USA 
July 13-17, 2016 

=Past Yeast Meetings=
International Conference on Yeast Genetics and Molecular Biology 
:Browse or search abstracts: 
:[http://onlinelibrary.wiley.com/doi/10.1002/yea.v30.S1/issuetoc 2013] (XXVI) | [http://www.ncbi.nlm.nih.gov/pubmed/21681987 2011] (XXV) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1682/abstract 2009] (XXIV) | [http://www.yeastgenome.org/community/meetings/yeast07/ 2007] (XXIII) | [http://www.yeastgenome.org/community/meetings/yeast05/ 2005] (XXII) | [http://www.yeastgenome.org/community/meetings/yeast03/ 2003] (XXI) | [http://www.yeastgenome.org/community/meetings/yeast01/ 2001] (XX)

Yeast Genetics & Molecular Biology Meeting 
:Browse or search abstracts; view participant lists and photos: 
:[http://wiki.yeastgenome.org/index.php/File:Program_Book_Abstracts_Yeast_2014.pdf 2014 (download PDF abstract book)] | [http://www.yeast-meet.org/2012/ 2012] | [http://www.yeast-meet.org/2010/ 2010] | [http://www.yeast-meet.org/2008 2008] | [http://www.yeastgenome.org/community/meetings/yeast06/ 2006] | [http://www.yeastgenome.org/community/meetings/yeast04/ 2004] | [http://www.yeastgenome.org/community/meetings/yeast02/ 2002] | [http://www.yeastgenome.org/community/meetings/yeast00/ 2000] | [http://www.yeastgenome.org/community/meetings/yeast98/ 1998] | [http://www.yeastgenome.org/community/meetings/yeast96/ 1996]

S. cerevisiae Codon Usage Tables

2014-09-29T16:34:07Z

Gail:

== January 2011 Codon Usage (genome version 64-1-1) produced using EMBOSS cusp==
*[http://bun-dev.stanford.edu/unpublished_data/codon/64_1_1_all_nuclear.cusp 64_1_1_all_nuclear.cusp] for all ORFs (5865) encoded in the nuclear genome except the dubious ORFs and pseudogenes (i.e. including all verified, uncharacterized ORFs and transposable element genes without stop codons in them).
*[http://bun-dev.stanford.edu/unpublished_data/codon/64_1_1_dubious.cusp 64_1_1_dubious.cusp] for all nuclearly encoded dubious ORFs (801).
*[http://bun-dev.stanford.edu/unpublished_data/codon/64_1_1_mito.cusp 64_1_1_mito.cusp] for all mitochondrial non-dubious ORFs (19).

== June 2008 Codon Usage (genome version 61-1-1) produced using GCG CodonFrequency==
All known or predicted ORF sequences contained within the complete yeast genomic sequence were included.
* [http://downloads.yeastgenome.org/unpublished_data/codon/s_cerevisiae-codonusage.txt s_cerevisiae-codonusage.txt]

==January 1999 Codon Usage (genome version 12-1-1) produced using GCG CodonFrequency==
All known or predicted ORF sequences contained within the complete yeast genomic sequence were included.
*[http://downloads.yeastgenome.org/unpublished_data/codon/ysc.gene.cod ysc.gene.cod] from 3,222 ORFs assigned a gene name by the community as listed within SGD.
*[http://downloads.yeastgenome.org/unpublished_data/codon/ysc.orf.cod ysc.orf.cod] from 6,222 ORFs listed within SGD.
*[http://downloads.yeastgenome.org/unpublished_data/codon/yscmt.cod yscmt.cod] from 28 mitochondrion genes in [http://www.yeastgenome.org/reference/S000058438/overview Foury F, et al. (1998)]

==1993 Codon Usage produced using GCG CodonFrequency==
Duplicates, pseudogenes, mutant and synthetic genes were not included. Coding regions were specified using the Feature Table of each entry, then checked for accuracy. If more than one stop codon was found the sequence was not included.
*[http://downloads.yeastgenome.org/unpublished_data/codon/ysc.g63.cod ysc.g63.cod] from 435 genes found in GenBank 63 (March 1990).
*[http://www.kazusa.or.jp/codon/ Codon Usage Database] from Yasukazu Nakamura using the latest GenBank Release.

Career Resources

2014-07-01T18:53:51Z

Gail:

Following is a list of sites that post biology related job openings. Please note that this is not a comprehensive list. Some of these sites may be free (may require registration) for job seekers, job posters or both.

'''Note''': ''Please include the posting date with your entry and remember to remove your entry once the position has been filled; old entries with broken links will be periodically cleaned up.''

* [[Positions in yeast labs]] posted by members of the research community

* Postdoctoral Position Available in Systems Biology at E&J Gallo Winery, Modesto, CA [http://hrsjobs.gallo.com/psp/ert/EJGAPP/PSFT_HR/c/HRS_HRAM.HRS_CE.GBL?Page=HRS_CE_JOB_DTL&Action=A&JobOpeningId=6210&SiteId=1&PostingSeq=1]

* Computational and Systems Biology at Memorial Sloan-Kettering Cancer Center - [http://cbio.mskcc.org/jobs All jobs] Recruitment.

* Technical Director, Enzymes position available through CPL Executive Search http://www.cplsearch.com/technical-director-enzymes/

== Links to other Career Resources ==

*[http://careers.genetics-gsa.org/ Open positions] offered by [http://www.genetics-gsa.org/ Genetics Society of America]

*[http://jobboard.ascb.org/ Career Services] offered by [http://www.ascb.org/ American Society for Cell Biology]

*[http://www.asmcareerconnections.org/home/index.cfm?site_id=756 ASM Career Connections] offered by [http://www.asm.org/ American Society for Microbiology]

*[http://careers.faseb.org/home/index.cfm?site_id=521 Career Resources] offered by [http://www.faseb.org/#sthash.NzYbAjmD.dpbs FASEB]

*[http://www.sdbonline.org/index.php?option=com_jobs&Itemid=36 Job Openings] offered by [http://www.sdbonline.org Society for Developmental Biology]

*[http://sciencecareers.sciencemag.org/ Science Careers] offered by [http://www.sciencemag.org/ Science Magazine Online]

*[http://www.nature.com/naturejobs/science/ Nature Jobs] offered by [http://www.nature.com Nature Online]

*[http://www.biospace.com Career Center] offered by [http://www.biospace.com Biospace.com]

Positions in yeast labs

2014-07-01T18:50:51Z

Gail:

== '''POSTDOCTORAL POSITION - NIH, National Cancer Institute, Posted April 16, 2014''' ==

A postdoctoral position is available within the Optical Imaging Core of the Laboratory of Receptor Biology and Gene Expression (NCI/NIH) to conduct research in the regulation of transcription in Saccharomyces cerevisiae. The candidate is expected to have a background in yeast genetics and molecular biology and to be interested in extensive live imaging by fluorescence microscopy and in super-resolution methods.
Publications in the area of research:
Tatiana S. Karpova, Teresa Y. Chen, Brian L. Sprague, James G. McNally. Dynamic interactions of a transcription factor with DNA are accelerated by a chromatin remodeler. EMBO Reports. 5: 1064-1070, 2004
Tatiana S. Karpova, Min J. Kim, Corentin Spriet, Kip Nalley, Tim Stasevich, Zoulika Kherrouche, Laurent Heliot, and James G. McNally. Concurrent Fast and Slow Cycling of a Transcriptional Activator at an Endogenous Promoter. Science 319: 466-469, 2008
Applicants should contact Dr. Tatiana Karpova (karpovat@mail.nih.gov) and submit their CV.

=='''Opening for two postdoctoral positions in the Cell Signaling Research Group, UPF, Barcelona, Spain (posted April 2014)'''==

Post description:
We offer two postdoctoral research positions in the Cell Signaling Research Group led by Dr. Francesc Posas and Dr. Eulàlia de Nadal), at the Pompeu Fabra University, Barcelona, Spain.
The main objective of our group is the study of the molecular mechanisms of signal transduction mediated by SAPKs (Stress Activated Protein Kinases) in yeast cells, as well as to understand the complexity of adaptive responses generated by these enzymes. Regulation of gene expression and cell cycle are two of the most important aspects for cell adaptation to stress [Nadal-Ribelles M. et al, Mol Cell (2014); Duch A. et al, Nature (2013); Nadal-Ribelles M. et al, Genome Biol (2012); de Nadal E. and Posas F., Nat. Rev. Genet. (2011); Solé C. et al., EMBO J (2011); Regot S. et al., Nature (2011)].
We are looking for a highly motivated research scientist with consolidated experience in biochemistry and/or yeast genetics to work in these fields.

The Institute:
UPF is a young, public and modern university and called to become one of the leading European universities. Awarded with a CEI label (International Excellence Campus) by the Spanish Ministry of Education, UPF's indicators have made it a benchmark for the Spanish and European university systems.
Our group is integrated into the Biomedical Research Park of Barcelona (PRBB), one of the largest hubs of biomedical research in southern Europe.

For more information please visit the web site:
http://www.upf.edu/cellsignaling

=='''Postdoctoral position in Cell Biology, Univ. of Miami, Florida (posted April 2014)'''==

A Postdoctoral position is available in the lab of Dr. Sandra Lemmon, University of Miami, Miller School of Medicine. Research focuses on regulation of membrane dynamics in the yeast S. cerevisiae. Particular interests include the role of phosphorylation, the actin cytoskeleton, and lipids in endocytosis and the function of clathrin in endocytosis and sorting to the lysosome/vacuole. For information on research interests check: <http://biomed.miami.edu/?p=482&pid=208&m=facultyph&mid=0&item=9>.

Qualifications: Candidates should have a PhD in chemistry, biology, genetics or a related life science. Applicants with a background in cell biology, yeast genetics and molecular biology, fluorescence microscopy and/or lipid biochemistry are especially encouraged to apply. Please submit a curriculum vitae, publications, summary of past research experiences, research interests, and the names of three references to: Dr. Sandra Lemmon at <slemmon[at]miami[dot]edu>.

=='''Postdoctoral Fellowship in yeast evolutionary genomics at Stanford University''', March 2014==

The Fraser Lab in the Department of Biology is seeking a postdoctoral fellow to work on the evolution of gene expression in Saccharomyces yeast. The exact subject is flexible, but will likely involve using RNA-seq to answer fundamental questions about the mechanisms and consequences of gene expression evolution- especially in cases of evolutionary adaptations. The ideal candidate would have experience in yeast molecular biology techniques, as well as some familiarity with computational and/or evolutionary analysis. Salary and benefits are both above the NIH standards for postdocs. Please email a cover letter and CV to hbfraser[at]stanford[dot]edu.

=='''Research Associate position (Ph.D. level) at Stanford University''', March 2014==

The Fraser Lab in the Department of Biology is seeking a Basic Life Science Research Associate (Ph.D. level). We apply the exciting tools of genomics and high-throughput sequencing to study the evolution of gene expression in a variety of species, but primarily budding yeast. Duties will include:

• Performing a wide range of experiments with the yeast S. cerevisiae. These will focus on a revolutionary new tool in molecular biology: genetic engineering via the CRISPR/Cas system. Other experiments will include gene knockout/replacement, chromatin immunoprecipitation, and high-throughput sequencing of mRNA.
• Teaching experimental protocols to others in the lab
• Keeping the lab's yeast strains/chemicals organized
• Overseeing an undergraduate student for dishwashing/media preparation

A Ph.D. in a Biology-related field is required, with at least 2 years spent working with S. cerevisiae. Also desirable (but not required) is experience with: mammalian cell culture, chromatin immunoprecipitation, and/or high-throughput sequencing. Please email a cover letter and CV to hbfraser[at]stanford[dot]edu.

=='''Postdoctoral fellowship in cell cycle evolution at the Institute of Genetics and Development of Rennes, France''', January 2014==

A three-year post-doctoral position supported by a starting grant from the European Research Council (ERC) is available in the group of Dr. Damien Coudreuse at the Institute of Genetics and Development of Rennes (IGDR), France (http://igdr.univ-rennes1.fr/english/). Research in this laboratory takes a synthetic biology approach in fission yeast to study the architecture and evolution of cell cycle regulation. The proposed project aims at understanding fundamental aspects of the evolution of cell proliferation, from how cells overcome external challenges to common features of independent evolutionary processes. It will be based on the use of fission yeast cells operating with various minimal cell cycle control circuits as starting points for experimental evolution approaches. Candidates should contact Dr. Damien Coudreuse at damien.coudreuse@univ-rennes1.fr and send a Curriculum Vitae, including past research experiences and publication records, as well as a letter detailing their motivation and interest in our work. Applicants should also request recommendation letters to be directly sent by two or three references.

Positions in yeast labs

2014-07-01T18:49:21Z

Gail:

Positions in yeast labs

2014-07-01T18:47:17Z

Gail:

Positions in yeast labs

2014-07-01T18:45:02Z

Gail:

'''
== POSTDOCTORAL POSITION - NIH, National Cancer Institute, Posted April 16, 2014 ==
'''
A postdoctoral position is available within the Optical Imaging Core of the Laboratory of Receptor Biology and Gene Expression (NCI/NIH) to conduct research in the regulation of transcription in Saccharomyces cerevisiae. The candidate is expected to have a background in yeast genetics and molecular biology and to be interested in extensive live imaging by fluorescence microscopy and in super-resolution methods.
Publications in the area of research:
Tatiana S. Karpova, Teresa Y. Chen, Brian L. Sprague, James G. McNally. Dynamic interactions of a transcription factor with DNA are accelerated by a chromatin remodeler. EMBO Reports. 5: 1064-1070, 2004
Tatiana S. Karpova, Min J. Kim, Corentin Spriet, Kip Nalley, Tim Stasevich, Zoulika Kherrouche, Laurent Heliot, and James G. McNally. Concurrent Fast and Slow Cycling of a Transcriptional Activator at an Endogenous Promoter. Science 319: 466-469, 2008
Applicants should contact Dr. Tatiana Karpova (karpovat@mail.nih.gov) and submit their CV.

=='''Opening for two postdoctoral positions in the Cell Signaling Research Group, UPF, Barcelona, Spain (posted April 2014)'''==

Post description:
We offer two postdoctoral research positions in the Cell Signaling Research Group led by Dr. Francesc Posas and Dr. Eulàlia de Nadal), at the Pompeu Fabra University, Barcelona, Spain.
The main objective of our group is the study of the molecular mechanisms of signal transduction mediated by SAPKs (Stress Activated Protein Kinases) in yeast cells, as well as to understand the complexity of adaptive responses generated by these enzymes. Regulation of gene expression and cell cycle are two of the most important aspects for cell adaptation to stress [Nadal-Ribelles M. et al, Mol Cell (2014); Duch A. et al, Nature (2013); Nadal-Ribelles M. et al, Genome Biol (2012); de Nadal E. and Posas F., Nat. Rev. Genet. (2011); Solé C. et al., EMBO J (2011); Regot S. et al., Nature (2011)].
We are looking for a highly motivated research scientist with consolidated experience in biochemistry and/or yeast genetics to work in these fields.

The Institute:
UPF is a young, public and modern university and called to become one of the leading European universities. Awarded with a CEI label (International Excellence Campus) by the Spanish Ministry of Education, UPF's indicators have made it a benchmark for the Spanish and European university systems.
Our group is integrated into the Biomedical Research Park of Barcelona (PRBB), one of the largest hubs of biomedical research in southern Europe.

For more information please visit the web site:
http://www.upf.edu/cellsignaling

=='''Postdoctoral position in Cell Biology, Univ. of Miami, Florida (posted April 2014)'''==

A Postdoctoral position is available in the lab of Dr. Sandra Lemmon, University of Miami, Miller School of Medicine. Research focuses on regulation of membrane dynamics in the yeast S. cerevisiae. Particular interests include the role of phosphorylation, the actin cytoskeleton, and lipids in endocytosis and the function of clathrin in endocytosis and sorting to the lysosome/vacuole. For information on research interests check: <http://biomed.miami.edu/?p=482&pid=208&m=facultyph&mid=0&item=9>.

Qualifications: Candidates should have a PhD in chemistry, biology, genetics or a related life science. Applicants with a background in cell biology, yeast genetics and molecular biology, fluorescence microscopy and/or lipid biochemistry are especially encouraged to apply. Please submit a curriculum vitae, publications, summary of past research experiences, research interests, and the names of three references to: Dr. Sandra Lemmon at <slemmon[at]miami[dot]edu>.

=='''Postdoctoral Fellowship in yeast evolutionary genomics at Stanford University'''==

The Fraser Lab in the Department of Biology is seeking a postdoctoral fellow to work on the evolution of gene expression in Saccharomyces yeast. The exact subject is flexible, but will likely involve using RNA-seq to answer fundamental questions about the mechanisms and consequences of gene expression evolution- especially in cases of evolutionary adaptations. The ideal candidate would have experience in yeast molecular biology techniques, as well as some familiarity with computational and/or evolutionary analysis. Salary and benefits are both above the NIH standards for postdocs. Please email a cover letter and CV to hbfraser[at]stanford[dot]edu.

=='''Research Associate position (Ph.D. level) at Stanford University'''==

The Fraser Lab in the Department of Biology is seeking a Basic Life Science Research Associate (Ph.D. level). We apply the exciting tools of genomics and high-throughput sequencing to study the evolution of gene expression in a variety of species, but primarily budding yeast. Duties will include:

• Performing a wide range of experiments with the yeast S. cerevisiae. These will focus on a revolutionary new tool in molecular biology: genetic engineering via the CRISPR/Cas system. Other experiments will include gene knockout/replacement, chromatin immunoprecipitation, and high-throughput sequencing of mRNA.
• Teaching experimental protocols to others in the lab
• Keeping the lab's yeast strains/chemicals organized
• Overseeing an undergraduate student for dishwashing/media preparation

A Ph.D. in a Biology-related field is required, with at least 2 years spent working with S. cerevisiae. Also desirable (but not required) is experience with: mammalian cell culture, chromatin immunoprecipitation, and/or high-throughput sequencing. Please email a cover letter and CV to hbfraser[at]stanford[dot]edu.

=='''Postdoctoral fellowship in cell cycle evolution at the Institute of Genetics and Development of Rennes, France'''==

A three-year post-doctoral position supported by a starting grant from the European Research Council (ERC) is available in the group of Dr. Damien Coudreuse at the Institute of Genetics and Development of Rennes (IGDR), France (http://igdr.univ-rennes1.fr/english/). Research in this laboratory takes a synthetic biology approach in fission yeast to study the architecture and evolution of cell cycle regulation. The proposed project aims at understanding fundamental aspects of the evolution of cell proliferation, from how cells overcome external challenges to common features of independent evolutionary processes. It will be based on the use of fission yeast cells operating with various minimal cell cycle control circuits as starting points for experimental evolution approaches. Candidates should contact Dr. Damien Coudreuse at damien.coudreuse@univ-rennes1.fr and send a Curriculum Vitae, including past research experiences and publication records, as well as a letter detailing their motivation and interest in our work. Applicants should also request recommendation letters to be directly sent by two or three references.

=='''Postdoctoral Fellowship in Cell Fate and Gene Regulation (POS00123), LRI/Crick Institute, London, UK'''==

We seek a talented and motivated Postdoc to join the Cell Fate and Gene Regulation Laboratory in London, UK. The Cell Fate and Gene Regulation laboratory headed by Dr Folkert van Werven will be opened in the fall of this year. It will be a small, highly interactive, international research group that focuses on understanding the molecular mechanisms of how cell fate decisions are controlled. Initially we will use budding yeast as a model system, and take molecular, systematic and quantitative approaches (including single-molecule, proteomic, and genomic techniques) to study this problem. For more information please send an email (Folkert.vanWerven at cancer.org.uk) or go to:
https://cruk.taleo.net/careersection/cruk_corporate/jobdetail.ftl?lang=en&job=POS00123&view=rss

=='''Postdoctoral Position in Biology of Yeast Colonies at Charles University in Prague, Czech Republic'''==

Postdoctoral positions are available in the lab of Zdena Palkova (http://www.natur.cuni.cz/~zdenap). The Research Group is interested in different aspects of yeast multicellularity including questions related to topics of yeast cell differentiation, ageing, stress defense, adaptation and longevity that are crucial in any organism, including humans.

Selected recent references:
• Cap M, Stepanek L, Harant K, Vachova L, Palkova Z. (2012) Cell differentiation within a yeast colony: metabolic and regulatory parallels with a tumor-affected organism. Mol Cell 46: 436-448
• Vachova L, Stovicek V, Hlavacek O, Chernyavskiy O, Stepanek L, Kubinová L, Palkova Z. (2011) Flo11p, drug efflux pumps, and the extracellular matrix cooperate to form biofilm yeast colonies. J Cell Biol. 194: 679-87.

Candidates should have experience in molecular and cellular biology and methodical knowledge in techniques of yeast cell growth and manipulation. In addition, candidates should have high motivation and ability to work independently and take responsibility for his/her own project as well as to work in a team.

The applicants should have (i) a recent PhD (the degree obtained no earlier than on 28th of March 2008), (ii) promising publication record and be able to speak fluent English (or Czech). Please send your motivation letter (<500 words), CV, list of publications (including IF and the number of citations) and contact information of three references directly to the group leader Zdena Palkova, mailto:zdenap@natur.cuni.cz (please combine all documents into single PDF file). Applications will be considered until suitable candidates are found. The positions include additional funds for the international mobility (3 months).

=='''PhD student in Molecular Biology (Marie Curie Early Stage Researcher)at the University of Gothenburg, Sweden'''==
A PhD student position in Molecular Biology/Systems Biology is available in the lab of Prof. Stefan Hohmann, Dept of Cell and Molecular Biology, University of Gothenburg, Sweden.

The research project “Experimental investigation of the yeast Hxk2/Snf1/Mig1 network” aims to understand the dynamic control of the Hxk2/Snf1/Mig1 glucose signalling pathway employing single cell technology developed in the ISOLATE project. Here the experimental platform generated in the project will be optimized, especially the formation of cell arrays of synchronized cells as well as image analysis. Using in parallel Mig1 and Msn2 reporters, response thresholds under different glucose levels will be establish and effects on cell-to-cell variability and bistability will be determined.

Requested Background(advantageous but not required): Yeast biology, yeast genetics, glucose signalling, use of microfluidic devices, microscopy, image analysis, application of nano-sensor technology, ‘systems’ thinking.

The Marie Curie project ISOLATE is a collaborative research and training network between eight partners, incl. in different European countries. The PhD students and postdocs in the project will perform top-notch research and will additionally benefit from an excellent training network offered by the project partners. Research stays during the PhD projects in other partners’ labs are strongly encouraged. Primarily recruitment of researchers from EC Member States and associated countries, but also open to researchers from third countries. Researchers are normally required to move from one country to another when taking up the appointment.

Please send an application including (1) a max. one-page cover letter containing a justification why this position was chosen as well as a career vision statement, (2) a complete CV with details on education, previous research activities and a list of publications (if any,)(3) a copy of the passport or ID with picture, (4) two letters of recommendation, to maria.enge@gu.se (Project Manager in Prof. Hohmann's group).

=='''PhD student in Systems Biology (Marie Curie Early Stage Researcher)at the University of Gothenburg, Sweden'''==

A PhD student position in Systems Biology is available in the lab of Prof. Stefan Hohmann, Dept of Cell and Molecular Biology, University of Gothenburg, Sweden.

The research project “Theoretical investigation of the yeast Hxk2/Snf1/Mig1 network” aims to understand the dynamic control of the Hxk2/Snf1/Mig1 glucose signalling pathway employing single cell technology developed in the ISOLATE project. Data generated in the project will be interpreted by mathematical modelling together with other project partners to understand feedback and feed-forward mechanisms of signalling. Mutants and inhibitory compounds will be used to test how those affect thresholds and bistability. The analysis will reveal the genetic determination of the system properties, how they are regulated and how robustness against perturbation is established.

Requested Background(advantageous but not required): Yeast biology, yeast genetics, glucose signaling, microscopy, image analysis, development of mathematical models, ‘systems’ thinking.

The Marie Curie project ISOLATE is a collaborative research and training network between eight partners, incl. in different European countries. The PhD students and postdocs in the project will perform top-notch research and will additionally benefit from an excellent training network offered by the project partners. Research stays during the PhD projects in other partners’ labs are strongly encouraged. Primarily recruitment of researchers from EC Member States and associated countries, but also open to researchers from third countries. Researchers are normally required to move from one country to another when taking up the appointment.

Please send an application including (1) a max. one-page cover letter containing a justification why this position was chosen as well as a career vision statement, (2) a complete CV with details on education, previous research activities and a list of publications (if any,)(3) a copy of the passport or ID with picture, (4) two letters of recommendation, to maria.enge@gu.se (Project Manager in Prof. Hohmann's group).

=='''Postdoctoral position to study Ty1 retrotransposition at the University of Georgia''' ==

A postdoctoral position is available in the lab of David J. Garfinkel, Department of Biochemistry and Molecular Biology, University of Georgia, Athens GA to work on the retrovirus-like transposon Ty1 of ''Saccharomyces''. Specifically, we are investigating a new form of RNA-interference based on Ty1 antisense RNAs that acts posttranslationally and targets Ty1 proteins in the absence of the conserved RNAi pathways.

Experience in molecular genetics, protein/nucleic acid interactions or cytology would be helpful.

Also see our website for further information [http://www.bmb.uga.edu/home/people/people.php?fname=David&lname=Garfinkel]

Please send resume or inquiries to:
David J. Garfinkel
Department of Biochemistry and Molecular Biology
A130 Life Sciences
120 Green St.
University of Georgia
Athens, GA 30622

tel: 706-542-9403
djgarf@bmb.uga.edu

==Yeast Systems Biology Position at Virginia Tech (Research Associate or Sr Research Associate)==
The Synthetic Biology group at Virginia Bioinformatics Institute (VBI) is involved in two collaborative research projects focused on the development of mathematical models of gene-protein regulatory networks controlling cell growth and division. Temporal organization of the budding yeast cell cycle has been studied from two vantage points: bottom-up models emphasize a protein regulatory network centered around cyclin-dependent protein kinases, whereas top-down models focus on a gene regulatory network governed by interrelated transcription factors. The first project is focused on unifying these two perspectives. The second project is focused on the development of stochastic models of the regulatory network controlling the cell cycle. Both projects are performed in close collaboration with experts in computer science, data mining, bioinformatics, and mathematical modeling. The successful candidate will be expected to contribute significantly to these two projects by being responsible for designing and performing experiments used to validate model predictions. These experiments will involve the development of a new collection of cell cycle mutants and their quantitative characterization by time-lapse microscopy. In addition, the successful candidate will be expected to prepare the results for publication and presentation, to help supervise graduate and undergraduate students, and to contribute to grant proposals.

Dependent on the qualifications of the successful candidate, the position will hold the research faculty rank of either Research Associate or Senior Research Associate.

Go to the [http://bit.ly/n4nDUQ position description] for additional information and for submitting applications.

More information about our team can be found by visiting:
* [http://www.vbi.vt.edu/faculty/personal/Jean_Peccoud Jean Peccoud's home page]
* [http://www.biol.vt.edu/faculty/tyson/ John Tyson's home page]
* [https://bioinformatics.cs.vt.edu/~murali/ T.M. Murali's home page]

==Postdoctoral position - Laboratory of Cell Physics - Strasbourg, France==
Postdoctoral position is available in the Laboratory of Cell Physics, ISIS/IGBMC, Strasbourg, France. The project will focus on the dynamics of the cytokinetic ring in the fission yeast S. pombe. The roles of the Rho GTPase, actin polymerisation, and myosin will be studied. The work will involve genetics, cell biology, microscopy, microfabrication and microfluidics; for more information, send a CV and contact information of referees to Dr. Daniel Riveline (riveline@unistra.fr)

Meetings

2014-06-24T18:12:17Z

Gail:

Meetings that may be of interest to the yeast community are listed below. If you would like to add a conference or meeting to the list, please log in to the wiki. If you do not have a user account, please contact the [http://www.yeastgenome.org/cgi-bin/suggestion SGD helpdesk] and we will gladly create an account for you.

=Upcoming Conferences & Courses =

[http://www.faseb.org/SRC/ Yeast Chromosome Structure, Replication and Segregation] 
Steamboat Springs, Colorado 
July 13-18, 2014 
Registration deadline, May18; Abstract deadline, June12

[http://meetings.cshl.edu/courses/2014/c-yeas14.shtml Yeast Genetics & Genomics Course] 
Cold Spring Harbor Labs, Cold Spring Harbor, NY 
July 22-August 11, 2014

[http://www.genetics-gsa.org/yeast/2014/ Yeast Genetics Meeting] 
University of Washington, Seattle WA 
July 29-August 3, 2014

[http://www.smyte.org Small Meeting on Yeast Transport and Energetics (SMYTE)] 
Hotel Omni Mont-Royal, Montreal, Canada 
August 27-30, 2014 
Abstract deadline, June 16th, 2014; Registration deadline, August 1st, 2014

EMBL Conference [http://www.embl.de/training/events/2014/FUN14-01/index.html Frontiers in Fungal Systems Biology] 
EMBL Heidelberg, Germany 
September 28-30, 2014

[http://www.issy31.com/ 31st International Specialised Symposium on Yeast] 
Vipava and Nova Gorica, Slovenia 
October 9-12, 2014

EMBL Conference [http://www.embl.de/training/events/2014/EAE14-01/index.html Experimental Approaches to Evolution and Ecology using Yeast & other Model Systems] 
EMBL Heidelberg, Germany 
October 12-15, 2014

Young Life Scientists' Symposium 2014: [http://yls2014.sciencesconf.org/ DNA Damage Response in Physiology and Disease] 
Rennes, France 
October 24, 2014 
Abstract deadline, September 15, 2014; Registration deadline, October 10, 2014

YEAST 2015: 27th International Conference on Yeast Genetics and Molecular Biology 
Venue in Italy, to be announced 
September 7-12, 2015

=Past Yeast Meetings=
International Conference on Yeast Genetics and Molecular Biology 
:Browse or search abstracts: 
:[http://onlinelibrary.wiley.com/doi/10.1002/yea.v30.S1/issuetoc 2013] (XXVI) | [http://www.yeast-2011.org/ 2011] (XXV) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1682/abstract 2009] (XXIV) | [http://www.yeastgenome.org/community/meetings/yeast07/ 2007] (XXIII) | [http://www.yeastgenome.org/community/meetings/yeast05/ 2005] (XXII) | [http://www.yeastgenome.org/community/meetings/yeast03/ 2003] (XXI) | [http://www.yeastgenome.org/community/meetings/yeast01/ 2001] (XX)

Yeast Genetics & Molecular Biology Meeting 
:Browse or search abstracts; view participant lists and photos: 
:[http://www.yeast-meet.org/2012/ 2012] | [http://www.yeast-meet.org/2010/ 2010] | [http://www.yeast-meet.org/2008 2008] | [http://www.yeastgenome.org/community/meetings/yeast06/ 2006] | [http://www.yeastgenome.org/community/meetings/yeast04/ 2004] | [http://www.yeastgenome.org/community/meetings/yeast02/ 2002] | [http://www.yeastgenome.org/community/meetings/yeast00/ 2000] | [http://www.yeastgenome.org/community/meetings/yeast98/ 1998] | [http://www.yeastgenome.org/community/meetings/yeast96/ 1996]

Meetings

2014-04-28T19:28:49Z

Gail: /* Past Yeast Meetings */

Meetings that may be of interest to the yeast community are listed below. If you would like to add a conference or meeting to the list, please log in to the wiki. If you do not have a user account, please contact the [http://www.yeastgenome.org/cgi-bin/suggestion SGD helpdesk] and we will gladly create an account for you.

=Upcoming Conferences & Courses =

[http://wiki.yeastgenome.org/index.php/Bay_Area_Yeast_Meeting Spring Bay Area Yeast Meeting] 
Stanford University, Stanford, CA 
April 19, 2014

EMBO Conference [http://events.embo.org/14-transcription-yeast/ Gene Transcription in Yeast: from Regulatory Networks to Mechanisms] 
Sant Feliu de Guixols, Spain 
June 14-19, 2014

[http://www.faseb.org/SRC/ Yeast Chromosome Structure, Replication and Segregation] 
Steamboat Springs, Colorado 
July 13-18, 2014 
Registration deadline, May18; abstract deadline, June12

[http://meetings.cshl.edu/courses/2014/c-yeas14.shtml Yeast Genetics & Genomics Course] 
Cold Spring Harbor Labs, Cold Spring Harbor, NY 
July 22-August 11, 2014

[http://www.genetics-gsa.org/yeast/2014/ Yeast Genetics Meeting] 
University of Washington, Seattle WA 
July 29 - August 3, 2014

EMBL Conference [http://www.embl.de/training/events/2014/FUN14-01/index.html Frontiers in Fungal Systems Biology] 
EMBL Heidelberg, Germany 
September 28-30, 2014

[http://www.issy31.com/ 31st International Specialised Symposium on Yeast] 
Vipava and Nova Gorica, Slovenia 
October 9-12, 2014

EMBL Conference [http://www.embl.de/training/events/2014/EAE14-01/index.html Experimental Approaches to Evolution and Ecology using Yeast & other Model Systems] 
EMBL Heidelberg, Germany 
October 12-15, 2014

[http://www.yeast2015.org/ YEAST 2015: 27th International Conference on Yeast Genetics and Molecular Biology] 
Lviv Technical University, Lviv, Ukraine 
July 26-31, 2015

=Past Yeast Meetings=
International Conference on Yeast Genetics and Molecular Biology 
:Browse or search abstracts: 
:[http://onlinelibrary.wiley.com/doi/10.1002/yea.v30.S1/issuetoc 2013] (XXVI) | [http://www.yeast-2011.org/ 2011] (XXV) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1682/abstract 2009] (XXIV) | [http://www.yeastgenome.org/community/meetings/yeast07/ 2007] (XXIII) | [http://www.yeastgenome.org/community/meetings/yeast05/ 2005] (XXII) | [http://www.yeastgenome.org/community/meetings/yeast03/ 2003] (XXI) | [http://www.yeastgenome.org/community/meetings/yeast01/ 2001] (XX)

Yeast Genetics & Molecular Biology Meeting 
:Browse or search abstracts; view participant lists and photos: 
:[http://www.yeast-meet.org/2012/ 2012] | [http://www.yeast-meet.org/2010/ 2010] | [http://www.yeast-meet.org/2008 2008] | [http://www.yeastgenome.org/community/meetings/yeast06/ 2006] | [http://www.yeastgenome.org/community/meetings/yeast04/ 2004] | [http://www.yeastgenome.org/community/meetings/yeast02/ 2002] | [http://www.yeastgenome.org/community/meetings/yeast00/ 2000] | [http://www.yeastgenome.org/community/meetings/yeast98/ 1998] | [http://www.yeastgenome.org/community/meetings/yeast96/ 1996]

Meetings

2014-04-28T19:27:48Z

Gail: /* Past Yeast Meetings */

Meetings that may be of interest to the yeast community are listed below. If you would like to add a conference or meeting to the list, please log in to the wiki. If you do not have a user account, please contact the [http://www.yeastgenome.org/cgi-bin/suggestion SGD helpdesk] and we will gladly create an account for you.

=Upcoming Conferences & Courses =

[http://wiki.yeastgenome.org/index.php/Bay_Area_Yeast_Meeting Spring Bay Area Yeast Meeting] 
Stanford University, Stanford, CA 
April 19, 2014

EMBO Conference [http://events.embo.org/14-transcription-yeast/ Gene Transcription in Yeast: from Regulatory Networks to Mechanisms] 
Sant Feliu de Guixols, Spain 
June 14-19, 2014

[http://www.faseb.org/SRC/ Yeast Chromosome Structure, Replication and Segregation] 
Steamboat Springs, Colorado 
July 13-18, 2014 
Registration deadline, May18; abstract deadline, June12

[http://meetings.cshl.edu/courses/2014/c-yeas14.shtml Yeast Genetics & Genomics Course] 
Cold Spring Harbor Labs, Cold Spring Harbor, NY 
July 22-August 11, 2014

[http://www.genetics-gsa.org/yeast/2014/ Yeast Genetics Meeting] 
University of Washington, Seattle WA 
July 29 - August 3, 2014

EMBL Conference [http://www.embl.de/training/events/2014/FUN14-01/index.html Frontiers in Fungal Systems Biology] 
EMBL Heidelberg, Germany 
September 28-30, 2014

[http://www.issy31.com/ 31st International Specialised Symposium on Yeast] 
Vipava and Nova Gorica, Slovenia 
October 9-12, 2014

EMBL Conference [http://www.embl.de/training/events/2014/EAE14-01/index.html Experimental Approaches to Evolution and Ecology using Yeast & other Model Systems] 
EMBL Heidelberg, Germany 
October 12-15, 2014

[http://www.yeast2015.org/ YEAST 2015: 27th International Conference on Yeast Genetics and Molecular Biology] 
Lviv Technical University, Lviv, Ukraine 
July 26-31, 2015

=Past Yeast Meetings=
International Conference on Yeast Genetics and Molecular Biology 
:Browse or search abstracts: 
:[http://onlinelibrary.wiley.com/doi/10.1002/yea.v30.S1/issuetoc 2013] (XXVI) | [http://www.yeast-2011.org/ 2011] (XXV) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1682/abstract 2009] (XXIV) | [http://www.yeastgenome.org/community/meetings/yeast07/ 2007] (XXIII) | [http://www.yeastgenome.org/community/meetings/yeast05/ 2005] (XXII) | [http://www.yeastgenome.org/community/meetings/yeast03/ 2003] (XXI) | [http://www.yeastgenome.org/community/meetings/yeast01/ 2001] (XX)

Yeast Genetics & Molecular Biology Meeting 
:Browse or search abstracts; view participant lists and photos: 
:[http://www.yeast-meet.org/2012/ 2012] | [http://www.yeast-meet.org/2010/ 2010] | [http://www.yeast-meet.org/2008 2008] | [http://www.yeastgenome.org/community/meetings/yeast06/ 2006] | [http://www.yeastgenome.org/community/meetings/yeast04/ 2004] | [http://www.yeastgenome.org/community/meetings/yeast02/ 2002] | [http://www.yeastgenome.org/community/meetings/yeast00/ 2000] | [http://www.yeastgenome.org/community/meetings/yeast98/ 1998] | [http://www.yeastgenome.org/download-data/reference_library/yeast_meetings/yeast96 1996]

Meetings

2014-04-16T22:38:32Z

Gail: /* Upcoming Conferences & Courses */

Meetings that may be of interest to the yeast community are listed below. If you would like to add a conference or meeting to the list, please log in to the wiki. If you do not have a user account, please contact the [http://www.yeastgenome.org/cgi-bin/suggestion SGD helpdesk] and we will gladly create an account for you.

=Upcoming Conferences & Courses =

[http://wiki.yeastgenome.org/index.php/Bay_Area_Yeast_Meeting Spring Bay Area Yeast Meeting] 
Stanford University, Stanford, CA 
April 19, 2014

EMBO Conference [http://events.embo.org/14-transcription-yeast/ Gene Transcription in Yeast: from Regulatory Networks to Mechanisms] 
Sant Feliu de Guixols, Spain 
June 14-19, 2014

[http://www.faseb.org/SRC/ Yeast Chromosome Structure, Replication and Segregation] 
Steamboat Springs, Colorado 
July 13-18, 2014 
Registration deadline, May18; abstract deadline, June12

[http://meetings.cshl.edu/courses/2014/c-yeas14.shtml Yeast Genetics & Genomics Course] 
Cold Spring Harbor Labs, Cold Spring Harbor, NY 
July 22-August 11, 2014

[http://www.genetics-gsa.org/yeast/2014/ Yeast Genetics Meeting] 
University of Washington, Seattle WA 
July 29 - August 3, 2014

EMBL Conference [http://www.embl.de/training/events/2014/FUN14-01/index.html Frontiers in Fungal Systems Biology] 
EMBL Heidelberg, Germany 
September 28-30, 2014

[http://www.issy31.com/ 31st International Specialised Symposium on Yeast] 
Vipava and Nova Gorica, Slovenia 
October 9-12, 2014

EMBL Conference [http://www.embl.de/training/events/2014/EAE14-01/index.html Experimental Approaches to Evolution and Ecology using Yeast & other Model Systems] 
EMBL Heidelberg, Germany 
October 12-15, 2014

[http://www.yeast2015.org/ YEAST 2015: 27th International Conference on Yeast Genetics and Molecular Biology] 
Lviv Technical University, Lviv, Ukraine 
July 26-31, 2015

=Past Yeast Meetings=
International Conference on Yeast Genetics and Molecular Biology 
:Browse or search abstracts: 
:[http://onlinelibrary.wiley.com/doi/10.1002/yea.v30.S1/issuetoc 2013] (XXVI) | [http://www.yeast-2011.org/ 2011] (XXV) | [http://onlinelibrary.wiley.com/doi/10.1002/yea.1682/abstract 2009] (XXIV) | [http://www.yeastgenome.org/community/meetings/yeast07/ 2007] (XXIII) | [http://www.yeastgenome.org/community/meetings/yeast05/ 2005] (XXII) | [http://www.yeastgenome.org/community/meetings/yeast03/ 2003] (XXI) | [http://www.yeastgenome.org/community/meetings/yeast01/ 2001] (XX)

Yeast Genetics & Molecular Biology Meeting 
:Browse or search abstracts; view participant lists and photos: 
:[http://www.yeast-meet.org/2012/ 2012] | [http://www.yeast-meet.org/2010/ 2010] | [http://www.yeast-meet.org/2008 2008] | [http://www.yeastgenome.org/community/meetings/yeast06/ 2006] | [http://www.yeastgenome.org/community/meetings/yeast04/ 2004] | [http://www.yeastgenome.org/community/meetings/yeast02/ 2002] | [http://www.yeastgenome.org/community/meetings/yeast00/ 2000] | [http://www.yeastgenome.org/community/meetings/yeast98/ 1998] | [http://www.yeastgenome.org/community/meetings/yeast96/ 1996]

MediaWiki:Sidebar

2014-04-16T17:36:18Z

Gail:

Historical Systematic Sequence Information

2014-04-16T17:35:05Z

Gail:

These pages refer to the systematic sequence of S288C prior to Release 64. Before Release 64, there were [[Guidelines_for_changing_systematic_sequence | guidelines for changing systematic sequence]].

= Maps =
[[Original_Sequence_Papers|Original Sequence papers]]

[[Yeast_Mortimer_Maps_-_Edition_12|Mortimer Genetic and Physical Maps - Edition 12]]

[[Combined_Physical_and_Genetic_Maps_of_S._cerevisiae|Combined Physical and Genetics Maps - 1997]]

=Chromosomal Features=
[[Modified_Nucleotides_within_RNAs_in_S._cerevisiae|Modified Nucleotides within RNAs in S. cerevisiae]]

Meiotic Double-Stranded Breaks in the Yeast Genome: [[Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Graphic]] | [[Tabular_Form_of_Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Table]]

[[S._cerevisiae_Codon_Usage_Tables|Codon Usage Tables]]

=Reagents=
[[Primer_Set_Sequences| Primer sets for amplifying yeast ORFs]]

[[Commonly_used_auxotrophic_markers|Commonly Used Auxotrophic Markers]]

Historical Systematic Sequence Information

2014-04-16T17:28:54Z

Gail:

These pages refer to the systematic sequence of S288C prior to Release 64. Before Release 64, there were [[Guidelines_for_changing_systematic_sequence | guidelines for changing systematic sequence]].

=Chromosomal Features=
[[Modified_Nucleotides_within_RNAs_in_S._cerevisiae|Modified Nucleotides within RNAs in S. cerevisiae]]

Meiotic Double-Stranded Breaks in the Yeast Genome: [[Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Graphic]] | [[Tabular_Form_of_Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Table]]

[[S._cerevisiae_Codon_Usage_Tables|Codon Usage Tables]]

=Reagents=
[[Primer_Set_Sequences| Primer sets for amplifying yeast ORFs]]

[[Commonly_used_auxotrophic_markers|Commonly Used Auxotrophic Markers]]

Historical Systematic Sequence Information

2014-04-16T17:27:53Z

Gail:

These pages refer to the systematic sequence of S288C prior to Release 64. Before Release 64, there were [[Guidelines_for_changing_systematic_sequence | guidelines for changing systematic sequence]].

=Chromosomal Features=
[[Modified_Nucleotides_within_RNAs_in_S._cerevisiae|Modified Nucleotides within RNAs in S. cerevisiae]]

[[Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Meiotic Double-Stranded Breaks in the Yeast Genome]] | [[Tabular_Form_of_Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Table]]

[[S._cerevisiae_Codon_Usage_Tables|Codon Usage Tables]]

=Reagents=
[[Primer_Set_Sequences| Primer sets for amplifying yeast ORFs]]

[[Commonly_used_auxotrophic_markers|Commonly Used Auxotrophic Markers]]

Historical Systematic Sequence Information

2014-04-16T17:26:58Z

Gail:

These pages refer to the systematic sequence of S288C prior to Release 64. Before Release 64, there were [[Guidelines_for_changing_systematic_sequence | guidelines for changing systematic sequence]].

=Chromosomal Features=
[[Modified_Nucleotides_within_RNAs_in_S._cerevisiae|Modified Nucleotides within RNAs in S. cerevisiae]]

[[Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Meiotic Double-Stranded Breaks in the Yeast Genome]]

[[Tabular_Form_of_Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Tabular Form of Meiotic Double Stranded Breaks in the Yeast Genome]]

[[S._cerevisiae_Codon_Usage_Tables|Codon Usage Tables]]

=Reagents=
[[Primer_Set_Sequences| Primer sets for amplifying yeast ORFs]]

[[Commonly_used_auxotrophic_markers|Commonly Used Auxotrophic Markers]]

Historical Systematic Sequence Information

2014-04-16T17:25:49Z

Gail:

These pages refer to the systematic sequence of S288C prior to Release 64. Before Release 64, there were [[Guidelines_for_changing_systematic_sequence | guidelines for changing systematic sequence]].

=Chromosomal Features=
[[Modified_Nucleotides_within_RNAs_in_S._cerevisiae|Modified Nucleotides within RNAs in S. cerevisiae]]

[[Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Meiotic Double-Stranded Breaks in the Yeast Genome]]

[[Tabular_Form_of_Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Tabular Form of Meiotic Double Stranded Breaks in the Yeast Genome]]

[[S._cerevisiae_Codon_Usage_Tables|Codon Usage Tables]]

=Reagents=
[http://www.yeastgenome.org/community/primerPage.shtml Primer sets for amplifying yeast ORFs]

[[Commonly_used_auxotrophic_markers|Commonly Used Auxotrophic Markers]]

Historical Systematic Sequence Information

2014-04-16T17:06:02Z

Gail:

These pages refer to the systematic sequence of S288C prior to Release 64. Before Release 64, there were [[Guidelines_for_changing_systematic_sequence | guidelines for changing systematic sequence]].

=Chromosomal Features=
[[Modified_Nucleotides_within_RNAs_in_S._cerevisiae|Modified Nucleotides within RNAs in S. cerevisiae]]

[[Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Meiotic Double-Stranded Breaks in the Yeast Genome]]

[[Tabular_Form_of_Meiotic_Double-Stranded_Breaks_in_the_Yeast_Genome|Tabular For of Meiotic Double Stranded Breaks in the Yeast Genome]]

[[S._cerevisiae_Codon_Usage_Tables|Codon Usage Tables]]

=Reagents=
[http://www.yeastgenome.org/community/primerPage.shtml Primer sets for amplifying yeast ORFs]

[[Commonly_used_auxotrophic_markers|Commonly Used Auxotrophic Markers]]

Career Resources

2014-04-04T21:12:31Z

Gail:

Following is a list of sites that post biology related job openings. Please note that this is not a comprehensive list. Some of these sites may be free (may require registration) for job seekers, job posters or both.

'''Note''': ''Please include the posting date with your entry and remember to remove your entry once the position has been filled; old entries with broken links will be periodically cleaned up.''

* [[Positions in yeast labs]] posted by members of the research community

* Fermentation Instructor/Advisor, Oregon State University, Corvallis, Oregon; View Job Announcement: [[File:OSU-Fermentation Instructor-Advisor.pdf ]], ''Posted: March 28, 2014''

* Postdoctoral Position Available in Systems Biology at E&J Gallo Winery, Modesto, CA [http://hrsjobs.gallo.com/psp/ert/EJGAPP/PSFT_HR/c/HRS_HRAM.HRS_CE.GBL?Page=HRS_CE_JOB_DTL&Action=A&JobOpeningId=6210&SiteId=1&PostingSeq=1]

* Computational and Systems Biology at Memorial Sloan-Kettering Cancer Center - [http://cbio.mskcc.org/jobs Faculty] and [http://cbio.mskcc.org/jobs/postdoc.html Postdoc] Recruitment.

* Technical Director, Enzymes position available through CPL Executive Search http://www.cplsearch.com/technical-director-enzymes/

* R+D Scientist Synthetic Biology, Agilent Laboratories, Santa Clara CA http://wiki.yeastgenome.org/index.php/User:Agilent_Recruiter

== Links to other Career Resources ==

*[http://careers.genetics-gsa.org/ Open positions] offered by [http://www.genetics-gsa.org/ Genetics Society of America]

*[http://jobboard.ascb.org/ Career Services] offered by [http://www.ascb.org/ American Society for Cell Biology]

*[http://www.asmcareerconnections.org/home/index.cfm?site_id=756 ASM Career Connections] offered by [http://www.asm.org/ American Society for Microbiology]

*[http://careers.faseb.org/home/index.cfm?site_id=521 Career Resources] offered by [http://www.faseb.org/#sthash.NzYbAjmD.dpbs FASEB]

*[http://www.sdbonline.org/index.php?option=com_jobs&Itemid=36 Job Openings] offered by [http://www.sdbonline.org Society for Developmental Biology]

*[http://sciencecareers.sciencemag.org/ Science Careers] offered by [http://www.sciencemag.org/ Science Magazine Online]

*[http://www.nature.com/naturejobs/science/ Nature Jobs] offered by [http://www.nature.com Nature Online]

*[http://www.biospace.com Career Center] offered by [http://www.biospace.com Biospace.com]