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		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=368327</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=368327"/>
		<updated>2012-04-23T22:51:26Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Commercial Applications */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'', one of the most well-known and commercially significant species of yeast, , has long been used as a leavening agent in baking. ''S. cerevisiae'', commonly known as baker’s yeast, ferment sugars present in dough to carbon dioxide and ethanol. The carbon dioxide becomes trapped in small bubbles in the dough, which causes the dough to rise. [[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']] Sourdough bread is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov).  The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|left|x150px|'''Dr. Emil Christian Hansen''', ''1842-1909'']]  &lt;br /&gt;
''Saccharomyces cerevisiae'' and other yeast species have also long been used to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages such as beer and wine.  There are two major classes of beer brewing yeast: ale yeast (top-fermenting type) and lager yeast (bottom-fermenting type). Ales are produced by ''S. cerevisiae'', the same yeast used to make bread.  These yeast rise to the surface during fermentation, and hence are called top-fermenting yeast. Top-fermenting yeasts are used to brew ales, porters, stouts, and wheat beers. Lagers, on the other hand, are produced by [http://en.wikipedia.org/wiki/Saccharomyces_pastorianus ''Saccharomyces pastorianus''].  This yeast species was formerly known as ''Saccharomyces carlsbergensis'',  named after the Carlsberg Brewery in Copenhagen where it was first isolated in pure culture by Dr. Emil Christian Hansen in 1883.  Lager yeast are best used at lower temperatures and grow slower than ale yeast.  As a result, they produce less surface foam and typically settle to the bottom of the fermenter, and are thus called bottom-type fermenters. Some of the lager styles made from bottom-fermenting yeasts include Pilsners, Märzen, Bocks, and American malt liquors. In modern beer brewing many of the original top fermentation strains have been modified to be bottom fermenters. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|right|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
&lt;br /&gt;
Yeast produce wine by fermenting sugars present in grape juice (must) into ethanol. The fermentation of wine can be initiated by naturally occurring yeast present in the vineyards, but many wineries choose to add a pure yeast culture to dominate and control the fermentation.   The bubbles in champagne and sparkling wines are produced by a secondary fermentation, typically in the bottle, which traps the carbon dioxide.  Carbon dioxide produced in wine production is released as a by-product.  One yeast cell can ferment approximately its own weight of glucose per hour. Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm. The sulfur dioxide present in commercially produced wine is actually added just after the grapes are crushed to kill the naturally present bacteria, mold, and yeast. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to grow and manipulate genetically.  In addition, the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result yeast are one of the most thoroughly researched eukaryotic organisms.  In 1996, ''S. cerevisiae'' was the first eukaryote to have its genome completely sequenced.  Several significant scientific discoveries have been made through ''S. cerevisiae'' research, including some which have led to Nobel Prizes.  These include an award to Drs. Leland Hartwell, Tim Hunt, and Paul Nurse in 2001 for their discovery of genes involved in regulating the cell cycle, as well as a 2009 award to Drs. Elizabeth Blackburn, Carol Greider, and Jack Szostak for their work showing how telomeres and the enzyme telomerase protect the ends of chromosomes from degradation.&lt;br /&gt;
&lt;br /&gt;
==Resources==&lt;br /&gt;
&lt;br /&gt;
* [http://www.yeastgenome.org/ ''Saccharomyces'' Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
* [http://www.candidagenome.org/ ''Candida'' Genome Database (CGD)], a resource for genomic sequence data and gene and protein information for Candida albicans. &lt;br /&gt;
&lt;br /&gt;
* [http://www.pombase.org/ PomBase], a comprehensive database for the fission yeast ''Schizosaccharomyces pombe'', providing structural and functional annotation, literature curation and access to large-scale data sets.&lt;br /&gt;
&lt;br /&gt;
* [http://www.ncbi.nlm.nih.gov/projects/genome/guide/fungi/ Fungal Genomes Central], a portal to information and resources about fungi and fungal sequencing projects from NCBI and the fungi research community.&lt;br /&gt;
&lt;br /&gt;
* An extensive list of [http://wiki.yeastgenome.org/index.php/External_Links yeast-related resources] on topics ranging from general yeast information to nucleic acids, genomes and proteins, expression data, localization, phenotypes and more.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/content/189/3/695.full.pdf+html Yeast: An Experimental Organism for 21st Century Biology].  (2011) David Botstein &amp;amp; Gerald R Fink, Genetics. 2011 Nov;189(3):695-704.&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/site/misc/yeastbook.xhtml YeastBook]. (2011) ''A comprehensive compendium of reviews that presents the current state of knowledge of the molecular biology, cellular biology, and genetics of the yeast Saccharomyces cerevisiae'', Genetics&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/From_a_to_alpha.html?id=79hO0A08odkC From a to alpha: Yeast as a Model for Cellular Differentiation]. (2007) Hitan D. Madhani, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=449&amp;amp;newtitle=Landmark%20Papers%20in%20Yeast%20Biology Landmark Papers in Yeast Biology]. (2006), edited by Patrick Linder, David Shore, and Michael N. Hall, Cold Spring Harbor Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=526&amp;amp;newtitle=Methods%20in%20Yeast%20Genetics%3A%20A%20Cold%20Spring%20%20Harbor%20Laboratory%20Course%20Manual%2C%202005%20Edition Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual]. (2005) David C. Amberg, Daniel J. Burke, and Jeffrey N. Strathern.  Cold Spring Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?cart=133468183249354789&amp;amp;fromlink=T&amp;amp;linkaction=full&amp;amp;linksortby=oop_title&amp;amp;--eqSKUdatarq=676 The Early Days of Yeast Genetics]. (1993) edited by Michael N. Hall and Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468299549480865&amp;amp;--eqskudatarq=189&amp;amp;newtitle=The%20Yeast%20Saccharomyces%3A%20Gene%20Expression The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression]. (1992) edited by Elizabeth W. Jones, John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) [http://www.ncbi.nlm.nih.gov/pubmed/1413997 Genetic and physical maps of ''Saccharomyces cerevisiae''], Edition 11.  Yeast '''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;--eqskudatarq=190 The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics]. (1991) edited by James R. Broach, John R. Pringle, and Elizabeth W. Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/Yeast.html?id=-GkHRQAACAAJ Yeast: A Practical Approach]. (1988) edited by I. Campbell and , and John H. Duffus, IRL Press, Ithaca, New York.&lt;br /&gt;
&lt;br /&gt;
* The Life of Yeasts. (1978) H.J. Phaff, M.W. Miller, and E. M. Mrak, Harvard University Press, Cambridge, Massachussetts.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=368326</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=368326"/>
		<updated>2012-04-23T22:49:50Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Commercial Applications */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'', one of the most well-known and commercially significant species of yeast, , has long been used as a leavening agent in baking. ''S. cerevisiae'', commonly known as baker’s yeast, ferment sugars present in dough to carbon dioxide and ethanol. The carbon dioxide becomes trapped in small bubbles in the dough, which causes the dough to rise. [[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']] Sourdough bread is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov).  The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|left|x150px|'''Dr. Emil Christian Hansen''', ''1842-1909'']]  &lt;br /&gt;
''Saccharomyces cerevisiae'' and other yeast species have also long been used to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages such as beer and wine.  There are two major classes of beer brewing yeast: ale yeast (top-fermenting type) and lager yeast (bottom-fermenting type). Ales are produced by ''S. cerevisiae'', the same yeast used to make bread.  These yeast rise to the surface during fermentation, and hence are called top-fermenting yeast. Top-fermenting yeasts are used to brew ales, porters, stouts, and wheat beers. Lagers, on the other hand, are produced by [http://en.wikipedia.org/wiki/Saccharomyces_pastorianus ''Saccharomyces pastorianus''].  This yeast species was formerly known as ''Saccharomyces carlsbergensis'',  named after the Carlsberg Brewery in Copenhagen where it was first isolated in pure culture by Dr. Emil Christian Hansen in 1883.  Lager yeast are best used at lower temperatures and grow slower than ale yeast.  As a result, they produce less surface foam and typically settle to the bottom of the fermenter, and are thus called bottom-type fermenters. Some of the lager styles made from bottom-fermenting yeasts are Pilsners, Märzen, Bocks, and American malt liquors. In modern beer brewing many of the original top fermentation strains have been modified to be bottom fermenters. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|right|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
&lt;br /&gt;
Yeast produce wine by fermenting sugars present in grape juice (must) into ethanol. The fermentation of wine can be initiated by naturally occurring yeast present in the vineyards, but many wineries choose to add a pure yeast culture to dominate and control the fermentation.   The bubbles in champagne and sparkling wines are produced by a secondary fermentation, typically in the bottle, which traps the carbon dioxide.  Carbon dioxide produced in wine production is released as a by-product.  One yeast cell can ferment approximately its own weight of glucose per hour. Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm. The sulfur dioxide present in commercially produced wine is actually added just after the grapes are crushed to kill the naturally present bacteria, mold, and yeast. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to grow and manipulate genetically.  In addition, the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result yeast are one of the most thoroughly researched eukaryotic organisms.  In 1996, ''S. cerevisiae'' was the first eukaryote to have its genome completely sequenced.  Several significant scientific discoveries have been made through ''S. cerevisiae'' research, including some which have led to Nobel Prizes.  These include an award to Drs. Leland Hartwell, Tim Hunt, and Paul Nurse in 2001 for their discovery of genes involved in regulating the cell cycle, as well as a 2009 award to Drs. Elizabeth Blackburn, Carol Greider, and Jack Szostak for their work showing how telomeres and the enzyme telomerase protect the ends of chromosomes from degradation.&lt;br /&gt;
&lt;br /&gt;
==Resources==&lt;br /&gt;
&lt;br /&gt;
* [http://www.yeastgenome.org/ ''Saccharomyces'' Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
* [http://www.candidagenome.org/ ''Candida'' Genome Database (CGD)], a resource for genomic sequence data and gene and protein information for Candida albicans. &lt;br /&gt;
&lt;br /&gt;
* [http://www.pombase.org/ PomBase], a comprehensive database for the fission yeast ''Schizosaccharomyces pombe'', providing structural and functional annotation, literature curation and access to large-scale data sets.&lt;br /&gt;
&lt;br /&gt;
* [http://www.ncbi.nlm.nih.gov/projects/genome/guide/fungi/ Fungal Genomes Central], a portal to information and resources about fungi and fungal sequencing projects from NCBI and the fungi research community.&lt;br /&gt;
&lt;br /&gt;
* An extensive list of [http://wiki.yeastgenome.org/index.php/External_Links yeast-related resources] on topics ranging from general yeast information to nucleic acids, genomes and proteins, expression data, localization, phenotypes and more.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/content/189/3/695.full.pdf+html Yeast: An Experimental Organism for 21st Century Biology].  (2011) David Botstein &amp;amp; Gerald R Fink, Genetics. 2011 Nov;189(3):695-704.&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/site/misc/yeastbook.xhtml YeastBook]. (2011) ''A comprehensive compendium of reviews that presents the current state of knowledge of the molecular biology, cellular biology, and genetics of the yeast Saccharomyces cerevisiae'', Genetics&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/From_a_to_alpha.html?id=79hO0A08odkC From a to alpha: Yeast as a Model for Cellular Differentiation]. (2007) Hitan D. Madhani, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=449&amp;amp;newtitle=Landmark%20Papers%20in%20Yeast%20Biology Landmark Papers in Yeast Biology]. (2006), edited by Patrick Linder, David Shore, and Michael N. Hall, Cold Spring Harbor Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=526&amp;amp;newtitle=Methods%20in%20Yeast%20Genetics%3A%20A%20Cold%20Spring%20%20Harbor%20Laboratory%20Course%20Manual%2C%202005%20Edition Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual]. (2005) David C. Amberg, Daniel J. Burke, and Jeffrey N. Strathern.  Cold Spring Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?cart=133468183249354789&amp;amp;fromlink=T&amp;amp;linkaction=full&amp;amp;linksortby=oop_title&amp;amp;--eqSKUdatarq=676 The Early Days of Yeast Genetics]. (1993) edited by Michael N. Hall and Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468299549480865&amp;amp;--eqskudatarq=189&amp;amp;newtitle=The%20Yeast%20Saccharomyces%3A%20Gene%20Expression The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression]. (1992) edited by Elizabeth W. Jones, John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) [http://www.ncbi.nlm.nih.gov/pubmed/1413997 Genetic and physical maps of ''Saccharomyces cerevisiae''], Edition 11.  Yeast '''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;--eqskudatarq=190 The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics]. (1991) edited by James R. Broach, John R. Pringle, and Elizabeth W. Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/Yeast.html?id=-GkHRQAACAAJ Yeast: A Practical Approach]. (1988) edited by I. Campbell and , and John H. Duffus, IRL Press, Ithaca, New York.&lt;br /&gt;
&lt;br /&gt;
* The Life of Yeasts. (1978) H.J. Phaff, M.W. Miller, and E. M. Mrak, Harvard University Press, Cambridge, Massachussetts.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367860</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367860"/>
		<updated>2012-04-20T18:27:29Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Commercial Applications */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'', one of the most well-known and commercially significant species of yeast, , has long been used as a leavening agent in baking. ''S. cerevisiae'', commonly known as baker’s yeast, ferment sugars present in dough to carbon dioxide and ethanol. The carbon dioxide becomes trapped in small bubbles in the dough, which causes the dough to rise. [[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']] Sourdough bread is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov).  The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:128px-Weizenbier.jpg|thumb|left|x120px|'''Weizenbier (German)''']]  &lt;br /&gt;
''Saccharomyces cerevisiae'' and other yeast species have also long been used to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, such as beer and wine.  There are two major classes of beer brewing yeast: ale yeast (top-fermenting type) and lager yeast (bottom-fermenting type). Ales are produced by ''S. cerevisiae'', the same yeast used to make bread.  These yeast rise to the surface during fermentation, and hence are called top-fermenting yeast. Top-fermenting yeasts are used to brew ales, porters, stouts, and wheat beers. Lagers, on the other hand, are produced by [http://en.wikipedia.org/wiki/Saccharomyces_pastorianus ''Saccharomyces pastorianus''], formerly known as ''Saccharomyces carlsbergensis''.  Lager yeast are best used at lower temperatures and grow slower than ale yeast.  As a result, they produce less surface foam and typically settle to the bottom of the fermenter, and are thus called bottom-type fermenters. Some of the lager styles made from bottom-fermenting yeasts are Pilsners, Märzen, Bocks, and American malt liquors. In modern beer brewing many of the original top fermentation strains have been modified to be bottom fermenters. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|right|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
&lt;br /&gt;
Yeast produce wine by fermenting sugars present in grape juice (must) into ethanol. The fermentation of wine can be initiated by naturally occurring yeast present in the vineyards, but many wineries choose to add a pure yeast culture to dominate and control the fermentation.   The bubbles in champagne and sparkling wines are produced by a secondary fermentation, typically in the bottle, which traps the carbon dioxide.  Carbon dioxide produced in wine production is released as a by-product.  One yeast cell can ferment approximately its own weight of glucose per hour. Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm. The sulfur dioxide present in commercially produced wine is actually added just after the grapes are crushed to kill the naturally present bacteria, mold, and yeast. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to grow and manipulate genetically.  In addition, the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result yeast are one of the most thoroughly researched eukaryotic organisms.  In 1996, ''S. cerevisiae'' was the first eukaryote to have its genome completely sequenced.  Several significant scientific discoveries have been made through ''S. cerevisiae'' research, including some which have led to Nobel Prizes.  These include an award to Drs. Leland Hartwell, Tim Hunt, and Paul Nurse in 2001 for their discovery of genes involved in regulating the cell cycle, as well as a 2009 award to Drs. Elizabeth Blackburn, Carol Greider, and Jack Szostak for their work showing how telomeres and the enzyme telomerase protect the ends of chromosomes from degradation.&lt;br /&gt;
&lt;br /&gt;
==Resources==&lt;br /&gt;
&lt;br /&gt;
* [http://www.yeastgenome.org/ ''Saccharomyces'' Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
* [http://www.candidagenome.org/ ''Candida'' Genome Database (CGD)], a resource for genomic sequence data and gene and protein information for Candida albicans. &lt;br /&gt;
&lt;br /&gt;
* [http://www.pombase.org/ PomBase], a comprehensive database for the fission yeast ''Schizosaccharomyces pombe'', providing structural and functional annotation, literature curation and access to large-scale data sets.&lt;br /&gt;
&lt;br /&gt;
* [http://www.ncbi.nlm.nih.gov/projects/genome/guide/fungi/ Fungal Genomes Central], a portal to information and resources about fungi and fungal sequencing projects from NCBI and the fungi research community.&lt;br /&gt;
&lt;br /&gt;
* An extensive list of [http://wiki.yeastgenome.org/index.php/External_Links yeast-related resources] on topics ranging from general yeast information to nucleic acids, genomes and proteins, expression data, localization, phenotypes and more.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/content/189/3/695.full.pdf+html Yeast: An Experimental Organism for 21st Century Biology].  (2011) David Botstein &amp;amp; Gerald R Fink, Genetics. 2011 Nov;189(3):695-704.&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/site/misc/yeastbook.xhtml YeastBook]. (2011) ''A comprehensive compendium of reviews that presents the current state of knowledge of the molecular biology, cellular biology, and genetics of the yeast Saccharomyces cerevisiae'', Genetics&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/From_a_to_alpha.html?id=79hO0A08odkC From a to alpha: Yeast as a Model for Cellular Differentiation]. (2007) Hitan D. Madhani, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=449&amp;amp;newtitle=Landmark%20Papers%20in%20Yeast%20Biology Landmark Papers in Yeast Biology]. (2006), edited by Patrick Linder, David Shore, and Michael N. Hall, Cold Spring Harbor Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=526&amp;amp;newtitle=Methods%20in%20Yeast%20Genetics%3A%20A%20Cold%20Spring%20%20Harbor%20Laboratory%20Course%20Manual%2C%202005%20Edition Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual]. (2005) David C. Amberg, Daniel J. Burke, and Jeffrey N. Strathern.  Cold Spring Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?cart=133468183249354789&amp;amp;fromlink=T&amp;amp;linkaction=full&amp;amp;linksortby=oop_title&amp;amp;--eqSKUdatarq=676 The Early Days of Yeast Genetics]. (1993) edited by Michael N. Hall and Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468299549480865&amp;amp;--eqskudatarq=189&amp;amp;newtitle=The%20Yeast%20Saccharomyces%3A%20Gene%20Expression The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression]. (1992) edited by Elizabeth W. Jones, John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) [http://www.ncbi.nlm.nih.gov/pubmed/1413997 Genetic and physical maps of ''Saccharomyces cerevisiae''], Edition 11.  Yeast '''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;--eqskudatarq=190 The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics]. (1991) edited by James R. Broach, John R. Pringle, and Elizabeth W. Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/Yeast.html?id=-GkHRQAACAAJ Yeast: A Practical Approach]. (1988) edited by I. Campbell and , and John H. Duffus, IRL Press, Ithaca, New York.&lt;br /&gt;
&lt;br /&gt;
* The Life of Yeasts. (1978) H.J. Phaff, M.W. Miller, and E. M. Mrak, Harvard University Press, Cambridge, Massachussetts.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367858</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367858"/>
		<updated>2012-04-20T18:15:59Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Commercial Applications */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'', one of the most well-known and commercially significant species of yeast, , has long been used as a leavening agent in baking. ''S. cerevisiae'', commonly known as baker’s yeast, ferment sugars present in dough to carbon dioxide and ethanol. The carbon dioxide becomes trapped in small bubbles in the dough, which causes the dough to rise. [[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']] Sourdough bread is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov).  The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
''Saccharomyces cerevisiae'' and other yeast species have also long been used to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, such as beer and wine.  There are two major classes of beer brewing yeast: ale yeast (top-fermenting type) and lager yeast (bottom-fermenting type). Ales are produced by ''S. cerevisiae'', the same yeast used to make bread.  These yeast rise to the surface during fermentation, and hence are called top-fermenting yeast. Top-fermenting yeasts are used to brew ales, porters, stouts, and wheat beers. Lagers, on the other hand, are produced by [http://en.wikipedia.org/wiki/Saccharomyces_pastorianus ''Saccharomyces pastorianus''], formerly known as ''Saccharomyces carlsbergensis''.  Lager yeast are best used at lower temperatures and grow slower than ale yeast.  As a result, they produce less surface foam and typically settle to the bottom of the fermenter, and are thus called bottom-type fermenters. Some of the lager styles made from bottom-fermenting yeasts are Pilsners, Märzen, Bocks, and American malt liquors. In modern beer brewing many of the original top fermentation strains have been modified to be bottom fermenters. &lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast produce wine by fermenting sugars present in grape juice (must) into ethanol. The fermentation of wine can be initiated by naturally occurring yeast present in the vineyards, but many wineries choose to add a pure yeast culture to dominate and control the fermentation.   The bubbles in champagne and sparkling wines are produced by a secondary fermentation, typically in the bottle, which traps the carbon dioxide.  Carbon dioxide produced in wine production is released as a by-product.  One yeast cell can ferment approximately its own weight of glucose per hour. Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm. The sulfur dioxide present in commercially produced wine is actually added just after the grapes are crushed to kill the naturally present bacteria, mold, and yeast. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to grow and manipulate genetically.  In addition, the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result yeast are one of the most thoroughly researched eukaryotic organisms.  In 1996, ''S. cerevisiae'' was the first eukaryote to have its genome completely sequenced.  Several significant scientific discoveries have been made through ''S. cerevisiae'' research, including some which have led to Nobel Prizes.  These include an award to Drs. Leland Hartwell, Tim Hunt, and Paul Nurse in 2001 for their discovery of genes involved in regulating the cell cycle, as well as a 2009 award to Drs. Elizabeth Blackburn, Carol Greider, and Jack Szostak for their work showing how telomeres and the enzyme telomerase protect the ends of chromosomes from degradation.&lt;br /&gt;
&lt;br /&gt;
==Resources==&lt;br /&gt;
&lt;br /&gt;
* [http://www.yeastgenome.org/ ''Saccharomyces'' Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
* [http://www.candidagenome.org/ ''Candida'' Genome Database (CGD)], a resource for genomic sequence data and gene and protein information for Candida albicans. &lt;br /&gt;
&lt;br /&gt;
* [http://www.pombase.org/ PomBase], a comprehensive database for the fission yeast ''Schizosaccharomyces pombe'', providing structural and functional annotation, literature curation and access to large-scale data sets.&lt;br /&gt;
&lt;br /&gt;
* [http://www.ncbi.nlm.nih.gov/projects/genome/guide/fungi/ Fungal Genomes Central], a portal to information and resources about fungi and fungal sequencing projects from NCBI and the fungi research community.&lt;br /&gt;
&lt;br /&gt;
* An extensive list of [http://wiki.yeastgenome.org/index.php/External_Links yeast-related resources] on topics ranging from general yeast information to nucleic acids, genomes and proteins, expression data, localization, phenotypes and more.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/content/189/3/695.full.pdf+html Yeast: An Experimental Organism for 21st Century Biology].  (2011) David Botstein &amp;amp; Gerald R Fink, Genetics. 2011 Nov;189(3):695-704.&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/site/misc/yeastbook.xhtml YeastBook]. (2011) ''A comprehensive compendium of reviews that presents the current state of knowledge of the molecular biology, cellular biology, and genetics of the yeast Saccharomyces cerevisiae'', Genetics&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/From_a_to_alpha.html?id=79hO0A08odkC From a to alpha: Yeast as a Model for Cellular Differentiation]. (2007) Hitan D. Madhani, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=449&amp;amp;newtitle=Landmark%20Papers%20in%20Yeast%20Biology Landmark Papers in Yeast Biology]. (2006), edited by Patrick Linder, David Shore, and Michael N. Hall, Cold Spring Harbor Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=526&amp;amp;newtitle=Methods%20in%20Yeast%20Genetics%3A%20A%20Cold%20Spring%20%20Harbor%20Laboratory%20Course%20Manual%2C%202005%20Edition Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual]. (2005) David C. Amberg, Daniel J. Burke, and Jeffrey N. Strathern.  Cold Spring Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?cart=133468183249354789&amp;amp;fromlink=T&amp;amp;linkaction=full&amp;amp;linksortby=oop_title&amp;amp;--eqSKUdatarq=676 The Early Days of Yeast Genetics]. (1993) edited by Michael N. Hall and Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468299549480865&amp;amp;--eqskudatarq=189&amp;amp;newtitle=The%20Yeast%20Saccharomyces%3A%20Gene%20Expression The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression]. (1992) edited by Elizabeth W. Jones, John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) [http://www.ncbi.nlm.nih.gov/pubmed/1413997 Genetic and physical maps of ''Saccharomyces cerevisiae''], Edition 11.  Yeast '''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;--eqskudatarq=190 The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics]. (1991) edited by James R. Broach, John R. Pringle, and Elizabeth W. Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/Yeast.html?id=-GkHRQAACAAJ Yeast: A Practical Approach]. (1988) edited by I. Campbell and , and John H. Duffus, IRL Press, Ithaca, New York.&lt;br /&gt;
&lt;br /&gt;
* The Life of Yeasts. (1978) H.J. Phaff, M.W. Miller, and E. M. Mrak, Harvard University Press, Cambridge, Massachussetts.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367857</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367857"/>
		<updated>2012-04-20T18:10:55Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Commercial Applications */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'', one of the most well-known and commercially significant species of yeast, , has long been used as a leavening agent in baking. ''S. cerevisiae'', commonly known as baker’s yeast, ferment sugars present in dough to carbon dioxide and ethanol. The carbon dioxide becomes trapped in small bubbles in the dough, which causes the dough to rise. [[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']] Sourdough bread is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov).  The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
''Saccharomyces cerevisiae'' and other yeast species have also long been used to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, such as beer and wine.  There are two major classes of beer brewing yeast: ale yeast (top-fermenting type) and lager yeast (bottom-fermenting type). Ales are produced by ''S. cerevisiae'', the same yeast used to make bread.  These yeast rise to the surface during fermentation, and hence are called top-fermenting yeast. Top-fermenting yeasts are used to brew ales, porters, stouts, and wheat beers. Lagers, on the other hand, are produced by [http://en.wikipedia.org/wiki/Saccharomyces_pastorianus ''Saccharomyces pastorianus''], formerly known as ''Saccharomyces carlsbergensis''.  Lager yeast are best used at lower temperatures and grow slower than ale yeast.  As a result, they produce less surface foam and typically settle to the bottom of the fermenter, and are thus called bottom-type fermenters. Some of the lager styles made from bottom-fermenting yeasts are Pilsners, Marzen, Bocks, and American malt liquors. In modern beer brewing many of the original top fermentation strains have been modified to be bottom fermenters. &lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast produce wine by fermenting sugars present in grape juice (must) into ethanol. The fermentation of wine can be initiated by naturally occurring yeast present in the vineyards, but many wineries choose to add a pure yeast culture to dominate and control the fermentation.   The bubbles in champagne and sparkling wines are produced by a secondary fermentation, typically in the bottle, which traps the carbon dioxide.  Carbon dioxide produced in wine production is released as a by-product.  One yeast cell can ferment approximately its own weight of glucose per hour. Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm. The sulfur dioxide present in commercially produced wine is actually added just after the grapes are crushed to kill the naturally present bacteria, mold, and yeast. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to grow and manipulate genetically.  In addition, the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result yeast are one of the most thoroughly researched eukaryotic organisms.  In 1996, ''S. cerevisiae'' was the first eukaryote to have its genome completely sequenced.  Several significant scientific discoveries have been made through ''S. cerevisiae'' research, including some which have led to Nobel Prizes.  These include an award to Drs. Leland Hartwell, Tim Hunt, and Paul Nurse in 2001 for their discovery of genes involved in regulating the cell cycle, as well as a 2009 award to Drs. Elizabeth Blackburn, Carol Greider, and Jack Szostak for their work showing how telomeres and the enzyme telomerase protect the ends of chromosomes from degradation.&lt;br /&gt;
&lt;br /&gt;
==Resources==&lt;br /&gt;
&lt;br /&gt;
* [http://www.yeastgenome.org/ ''Saccharomyces'' Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
* [http://www.candidagenome.org/ ''Candida'' Genome Database (CGD)], a resource for genomic sequence data and gene and protein information for Candida albicans. &lt;br /&gt;
&lt;br /&gt;
* [http://www.pombase.org/ PomBase], a comprehensive database for the fission yeast ''Schizosaccharomyces pombe'', providing structural and functional annotation, literature curation and access to large-scale data sets.&lt;br /&gt;
&lt;br /&gt;
* [http://www.ncbi.nlm.nih.gov/projects/genome/guide/fungi/ Fungal Genomes Central], a portal to information and resources about fungi and fungal sequencing projects from NCBI and the fungi research community.&lt;br /&gt;
&lt;br /&gt;
* An extensive list of [http://wiki.yeastgenome.org/index.php/External_Links yeast-related resources] on topics ranging from general yeast information to nucleic acids, genomes and proteins, expression data, localization, phenotypes and more.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/content/189/3/695.full.pdf+html Yeast: An Experimental Organism for 21st Century Biology].  (2011) David Botstein &amp;amp; Gerald R Fink, Genetics. 2011 Nov;189(3):695-704.&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/site/misc/yeastbook.xhtml YeastBook]. (2011) ''A comprehensive compendium of reviews that presents the current state of knowledge of the molecular biology, cellular biology, and genetics of the yeast Saccharomyces cerevisiae'', Genetics&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/From_a_to_alpha.html?id=79hO0A08odkC From a to alpha: Yeast as a Model for Cellular Differentiation]. (2007) Hitan D. Madhani, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=449&amp;amp;newtitle=Landmark%20Papers%20in%20Yeast%20Biology Landmark Papers in Yeast Biology]. (2006), edited by Patrick Linder, David Shore, and Michael N. Hall, Cold Spring Harbor Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=526&amp;amp;newtitle=Methods%20in%20Yeast%20Genetics%3A%20A%20Cold%20Spring%20%20Harbor%20Laboratory%20Course%20Manual%2C%202005%20Edition Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual]. (2005) David C. Amberg, Daniel J. Burke, and Jeffrey N. Strathern.  Cold Spring Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?cart=133468183249354789&amp;amp;fromlink=T&amp;amp;linkaction=full&amp;amp;linksortby=oop_title&amp;amp;--eqSKUdatarq=676 The Early Days of Yeast Genetics]. (1993) edited by Michael N. Hall and Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468299549480865&amp;amp;--eqskudatarq=189&amp;amp;newtitle=The%20Yeast%20Saccharomyces%3A%20Gene%20Expression The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression]. (1992) edited by Elizabeth W. Jones, John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) [http://www.ncbi.nlm.nih.gov/pubmed/1413997 Genetic and physical maps of ''Saccharomyces cerevisiae''], Edition 11.  Yeast '''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;--eqskudatarq=190 The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics]. (1991) edited by James R. Broach, John R. Pringle, and Elizabeth W. Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/Yeast.html?id=-GkHRQAACAAJ Yeast: A Practical Approach]. (1988) edited by I. Campbell and , and John H. Duffus, IRL Press, Ithaca, New York.&lt;br /&gt;
&lt;br /&gt;
* The Life of Yeasts. (1978) H.J. Phaff, M.W. Miller, and E. M. Mrak, Harvard University Press, Cambridge, Massachussetts.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367856</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367856"/>
		<updated>2012-04-20T18:03:56Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Commercial Applications */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'', one of the most well-known and commercially significant species of yeast, , has long been used as a leavening agent in baking. ''S. cerevisiae'', commonly known as baker’s yeast, ferment sugars present in dough to carbon dioxide and ethanol. The carbon dioxide becomes trapped in small bubbles in the dough, which causes the dough to rise. [[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']] Sourdough bread is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov).  The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
''Saccharomyces cerevisiae'' and other yeast species have also long been used to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, such as beer and wine.  There are two major classes of beer brewing yeast: ale yeast (top-fermenting type) and lager yeast (bottom-fermenting type). Ales are produced by ''S. cerevisiae'', the same yeast used to make bread.  These yeast rise to the surface during fermentation, and hence are called top-fermenting yeast. Lagers, on the other hand, are produced by [http://en.wikipedia.org/wiki/Saccharomyces_pastorianus ''Saccharomyces pastorianus''], formerly known as ''Saccharomyces carlsbergensis''.  Lager yeast are best used at lower temperatures and grow slower than ale yeast.  As a result, they produce less surface foam and typically settle to the bottom of the fermenter, and are thus called bottom-type fermenters.  In modern beer brewing many of the original top fermentation strains have been modified to be bottom fermenters. &lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast produce wine by fermenting sugars present in grape juice (must) into ethanol. The fermentation of wine can be initiated by naturally occurring yeast present in the vineyards, but many wineries choose to add a pure yeast culture to dominate and control the fermentation.   The bubbles in champagne and sparkling wines are produced by a secondary fermentation, typically in the bottle, which traps the carbon dioxide.  Carbon dioxide produced in wine production is released as a by-product.  One yeast cell can ferment approximately its own weight of glucose per hour. Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm. The sulfur dioxide present in commercially produced wine is actually added just after the grapes are crushed to kill the naturally present bacteria, mold, and yeast. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to grow and manipulate genetically.  In addition, the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result yeast are one of the most thoroughly researched eukaryotic organisms.  In 1996, ''S. cerevisiae'' was the first eukaryote to have its genome completely sequenced.  Several significant scientific discoveries have been made through ''S. cerevisiae'' research, including some which have led to Nobel Prizes.  These include an award to Drs. Leland Hartwell, Tim Hunt, and Paul Nurse in 2001 for their discovery of genes involved in regulating the cell cycle, as well as a 2009 award to Drs. Elizabeth Blackburn, Carol Greider, and Jack Szostak for their work showing how telomeres and the enzyme telomerase protect the ends of chromosomes from degradation.&lt;br /&gt;
&lt;br /&gt;
==Resources==&lt;br /&gt;
&lt;br /&gt;
* [http://www.yeastgenome.org/ ''Saccharomyces'' Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
* [http://www.candidagenome.org/ ''Candida'' Genome Database (CGD)], a resource for genomic sequence data and gene and protein information for Candida albicans. &lt;br /&gt;
&lt;br /&gt;
* [http://www.pombase.org/ PomBase], a comprehensive database for the fission yeast ''Schizosaccharomyces pombe'', providing structural and functional annotation, literature curation and access to large-scale data sets.&lt;br /&gt;
&lt;br /&gt;
* [http://www.ncbi.nlm.nih.gov/projects/genome/guide/fungi/ Fungal Genomes Central], a portal to information and resources about fungi and fungal sequencing projects from NCBI and the fungi research community.&lt;br /&gt;
&lt;br /&gt;
* An extensive list of [http://wiki.yeastgenome.org/index.php/External_Links yeast-related resources] on topics ranging from general yeast information to nucleic acids, genomes and proteins, expression data, localization, phenotypes and more.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/content/189/3/695.full.pdf+html Yeast: An Experimental Organism for 21st Century Biology].  (2011) David Botstein &amp;amp; Gerald R Fink, Genetics. 2011 Nov;189(3):695-704.&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/site/misc/yeastbook.xhtml YeastBook]. (2011) ''A comprehensive compendium of reviews that presents the current state of knowledge of the molecular biology, cellular biology, and genetics of the yeast Saccharomyces cerevisiae'', Genetics&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/From_a_to_alpha.html?id=79hO0A08odkC From a to alpha: Yeast as a Model for Cellular Differentiation]. (2007) Hitan D. Madhani, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=449&amp;amp;newtitle=Landmark%20Papers%20in%20Yeast%20Biology Landmark Papers in Yeast Biology]. (2006), edited by Patrick Linder, David Shore, and Michael N. Hall, Cold Spring Harbor Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=526&amp;amp;newtitle=Methods%20in%20Yeast%20Genetics%3A%20A%20Cold%20Spring%20%20Harbor%20Laboratory%20Course%20Manual%2C%202005%20Edition Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual]. (2005) David C. Amberg, Daniel J. Burke, and Jeffrey N. Strathern.  Cold Spring Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?cart=133468183249354789&amp;amp;fromlink=T&amp;amp;linkaction=full&amp;amp;linksortby=oop_title&amp;amp;--eqSKUdatarq=676 The Early Days of Yeast Genetics]. (1993) edited by Michael N. Hall and Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468299549480865&amp;amp;--eqskudatarq=189&amp;amp;newtitle=The%20Yeast%20Saccharomyces%3A%20Gene%20Expression The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression]. (1992) edited by Elizabeth W. Jones, John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) [http://www.ncbi.nlm.nih.gov/pubmed/1413997 Genetic and physical maps of ''Saccharomyces cerevisiae''], Edition 11.  Yeast '''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;--eqskudatarq=190 The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics]. (1991) edited by James R. Broach, John R. Pringle, and Elizabeth W. Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/Yeast.html?id=-GkHRQAACAAJ Yeast: A Practical Approach]. (1988) edited by I. Campbell and , and John H. Duffus, IRL Press, Ithaca, New York.&lt;br /&gt;
&lt;br /&gt;
* The Life of Yeasts. (1978) H.J. Phaff, M.W. Miller, and E. M. Mrak, Harvard University Press, Cambridge, Massachussetts.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367688</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367688"/>
		<updated>2012-04-19T20:01:22Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Commercial Applications */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' is one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'' is used in bottom fermentation for the production of several types of lager beers.  Now called [http://en.wikipedia.org/wiki/Saccharomyces_pastorianus ''Saccharomyces pastorianus''], this yeast was initially named after the Carlsberg Brewery in Copenhagen where it was first isolated in pure culture by Dr. Emil Christian Hansen (1842-1909) in 1883.  In contrast, ''S. cerevisiae'' is used for the production of ales and conducts top fermentation, in which the yeast rise to the surface of the brewing vessel.  In modern brewing many of the original top fermentation strains have been modified to be bottom fermenters.  &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the flour or added to the dough. This fermentation gives off carbon dioxide and ethanol.  The carbon dioxide is trapped within tiny bubbles and results in the dough expanding, or rising. Sourdough bread, is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco sourdough cultures is about 1:100. The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast present in the vineyards. Many wineries still use natural strains, however many use modern methods of strain maintenance and isolation.  The bubbles in sparkling wines is trapped carbon dioxide, the result of yeast fermenting sugars in the grape juice.  One yeast cell can ferment approximately its own weight of glucose per hour.  Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm.  The sulfur dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria, mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
In addition to playing a major role in baking, brewing, and wine making, the in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to grow and manipulate genetically.  In addition, the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result yeast are one of the most thoroughly researched eukaryotic organisms.  In 1996, ''S. cerevisiae'' was the first eukaryote to have its genome completely sequenced.  Several significant scientific discoveries have been made through ''S. cerevisiae'' research, including some which have led to Nobel Prizes.  These include an award to Drs. Leland Hartwell, Tim Hunt, and Paul Nurse in 2001 for their discovery of genes involved in regulating the cell cycle, as well as a 2009 award to Drs. Elizabeth Blackburn, Carol Greider, and Jack Szostak for their work showing how telomeres and the enzyme telomerase protect the ends of chromosomes from degradation.&lt;br /&gt;
&lt;br /&gt;
==Resources==&lt;br /&gt;
&lt;br /&gt;
* [http://www.yeastgenome.org/ ''Saccharomyces'' Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
* [http://www.candidagenome.org/ ''Candida'' Genome Database (CGD)], a resource for genomic sequence data and gene and protein information for Candida albicans. &lt;br /&gt;
&lt;br /&gt;
* [http://www.pombase.org/ PomBase], a comprehensive database for the fission yeast ''Schizosaccharomyces pombe'', providing structural and functional annotation, literature curation and access to large-scale data sets.&lt;br /&gt;
&lt;br /&gt;
* [http://www.ncbi.nlm.nih.gov/projects/genome/guide/fungi/ Fungal Genomes Central], a portal to information and resources about fungi and fungal sequencing projects from NCBI and the fungi research community.&lt;br /&gt;
&lt;br /&gt;
* An extensive list of [http://wiki.yeastgenome.org/index.php/External_Links yeast-related resources] on topics ranging from general yeast information to nucleic acids, genomes and proteins, expression data, localization, phenotypes and more.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/content/189/3/695.full.pdf+html Yeast: An Experimental Organism for 21st Century Biology].  (2011) David Botstein &amp;amp; Gerald R Fink, Genetics. 2011 Nov;189(3):695-704.&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/site/misc/yeastbook.xhtml YeastBook]. (2011) ''A comprehensive compendium of reviews that presents the current state of knowledge of the molecular biology, cellular biology, and genetics of the yeast Saccharomyces cerevisiae'', Genetics&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/From_a_to_alpha.html?id=79hO0A08odkC From a to alpha: Yeast as a Model for Cellular Differentiation]. (2007) Hitan D. Madhani, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=449&amp;amp;newtitle=Landmark%20Papers%20in%20Yeast%20Biology Landmark Papers in Yeast Biology]. (2006), edited by Patrick Linder, David Shore, and Michael N. Hall, Cold Spring Harbor Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=526&amp;amp;newtitle=Methods%20in%20Yeast%20Genetics%3A%20A%20Cold%20Spring%20%20Harbor%20Laboratory%20Course%20Manual%2C%202005%20Edition Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual]. (2005) David C. Amberg, Daniel J. Burke, and Jeffrey N. Strathern.  Cold Spring Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?cart=133468183249354789&amp;amp;fromlink=T&amp;amp;linkaction=full&amp;amp;linksortby=oop_title&amp;amp;--eqSKUdatarq=676 The Early Days of Yeast Genetics]. (1993) edited by Michael N. Hall and Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468299549480865&amp;amp;--eqskudatarq=189&amp;amp;newtitle=The%20Yeast%20Saccharomyces%3A%20Gene%20Expression The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression]. (1992) edited by Elizabeth W. Jones, John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) [http://www.ncbi.nlm.nih.gov/pubmed/1413997 Genetic and physical maps of ''Saccharomyces cerevisiae''], Edition 11.  Yeast '''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;--eqskudatarq=190 The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics]. (1991) edited by James R. Broach, John R. Pringle, and Elizabeth W. Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/Yeast.html?id=-GkHRQAACAAJ Yeast: A Practical Approach]. (1988) edited by I. Campbell and , and John H. Duffus, IRL Press, Ithaca, New York.&lt;br /&gt;
&lt;br /&gt;
* The Life of Yeasts. (1978) H.J. Phaff, M.W. Miller, and E. M. Mrak, Harvard University Press, Cambridge, Massachussetts.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367687</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367687"/>
		<updated>2012-04-19T19:58:32Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Yeast as a Model Organism */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' is one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'' is used in bottom fermentation for the production of several types of beers, namely lagers.  Now called [http://en.wikipedia.org/wiki/Saccharomyces_pastorianus ''Saccharomyces pastorianus''], this yeast was initially named after the Carlsberg Brewery in Copenhagen where it was first isolated in pure culture by Dr. Emil Christian Hansen (1842-1909) in 1883.  In contrast, ''S. cerevisiae'' is used for the production of ales and conducts top fermentation, in which the yeast rise to the surface of the brewing vessel.  In modern brewing many of the original top fermentation strains have been modified to be bottom fermenters.  &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the flour or added to the dough. This fermentation gives off carbon dioxide and ethanol.  The carbon dioxide is trapped within tiny bubbles and results in the dough expanding, or rising. Sourdough bread, is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco sourdough cultures is about 1:100. The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast present in the vineyards. Many wineries still use natural strains, however many use modern methods of strain maintenance and isolation.  The bubbles in sparkling wines is trapped carbon dioxide, the result of yeast fermenting sugars in the grape juice.  One yeast cell can ferment approximately its own weight of glucose per hour.  Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm.  The sulfur dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria, mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
In addition to playing a major role in baking, brewing, and wine making, the in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to grow and manipulate genetically.  In addition, the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result yeast are one of the most thoroughly researched eukaryotic organisms.  In 1996, ''S. cerevisiae'' was the first eukaryote to have its genome completely sequenced.  Several significant scientific discoveries have been made through ''S. cerevisiae'' research, including some which have led to Nobel Prizes.  These include an award to Drs. Leland Hartwell, Tim Hunt, and Paul Nurse in 2001 for their discovery of genes involved in regulating the cell cycle, as well as a 2009 award to Drs. Elizabeth Blackburn, Carol Greider, and Jack Szostak for their work showing how telomeres and the enzyme telomerase protect the ends of chromosomes from degradation.&lt;br /&gt;
&lt;br /&gt;
==Resources==&lt;br /&gt;
&lt;br /&gt;
* [http://www.yeastgenome.org/ ''Saccharomyces'' Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
* [http://www.candidagenome.org/ ''Candida'' Genome Database (CGD)], a resource for genomic sequence data and gene and protein information for Candida albicans. &lt;br /&gt;
&lt;br /&gt;
* [http://www.pombase.org/ PomBase], a comprehensive database for the fission yeast ''Schizosaccharomyces pombe'', providing structural and functional annotation, literature curation and access to large-scale data sets.&lt;br /&gt;
&lt;br /&gt;
* [http://www.ncbi.nlm.nih.gov/projects/genome/guide/fungi/ Fungal Genomes Central], a portal to information and resources about fungi and fungal sequencing projects from NCBI and the fungi research community.&lt;br /&gt;
&lt;br /&gt;
* An extensive list of [http://wiki.yeastgenome.org/index.php/External_Links yeast-related resources] on topics ranging from general yeast information to nucleic acids, genomes and proteins, expression data, localization, phenotypes and more.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/content/189/3/695.full.pdf+html Yeast: An Experimental Organism for 21st Century Biology].  (2011) David Botstein &amp;amp; Gerald R Fink, Genetics. 2011 Nov;189(3):695-704.&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/site/misc/yeastbook.xhtml YeastBook]. (2011) ''A comprehensive compendium of reviews that presents the current state of knowledge of the molecular biology, cellular biology, and genetics of the yeast Saccharomyces cerevisiae'', Genetics&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/From_a_to_alpha.html?id=79hO0A08odkC From a to alpha: Yeast as a Model for Cellular Differentiation]. (2007) Hitan D. Madhani, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=449&amp;amp;newtitle=Landmark%20Papers%20in%20Yeast%20Biology Landmark Papers in Yeast Biology]. (2006), edited by Patrick Linder, David Shore, and Michael N. Hall, Cold Spring Harbor Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=526&amp;amp;newtitle=Methods%20in%20Yeast%20Genetics%3A%20A%20Cold%20Spring%20%20Harbor%20Laboratory%20Course%20Manual%2C%202005%20Edition Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual]. (2005) David C. Amberg, Daniel J. Burke, and Jeffrey N. Strathern.  Cold Spring Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?cart=133468183249354789&amp;amp;fromlink=T&amp;amp;linkaction=full&amp;amp;linksortby=oop_title&amp;amp;--eqSKUdatarq=676 The Early Days of Yeast Genetics]. (1993) edited by Michael N. Hall and Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468299549480865&amp;amp;--eqskudatarq=189&amp;amp;newtitle=The%20Yeast%20Saccharomyces%3A%20Gene%20Expression The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression]. (1992) edited by Elizabeth W. Jones, John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) [http://www.ncbi.nlm.nih.gov/pubmed/1413997 Genetic and physical maps of ''Saccharomyces cerevisiae''], Edition 11.  Yeast '''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;--eqskudatarq=190 The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics]. (1991) edited by James R. Broach, John R. Pringle, and Elizabeth W. Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/Yeast.html?id=-GkHRQAACAAJ Yeast: A Practical Approach]. (1988) edited by I. Campbell and , and John H. Duffus, IRL Press, Ithaca, New York.&lt;br /&gt;
&lt;br /&gt;
* The Life of Yeasts. (1978) H.J. Phaff, M.W. Miller, and E. M. Mrak, Harvard University Press, Cambridge, Massachussetts.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367524</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367524"/>
		<updated>2012-04-18T17:09:31Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Yeast as a Model Organism */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' is one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the Carlsberg Brewery in Copenhagen, where it was first isolated in pure culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the production of several types of beers including lagers.  ''S. carlsbergensis'' is used for bottom fermentation.  ''S. cerevisiae'' is used for the production of ales and conducts top fermentation, in which the yeast rise to the surface of the brewing vessel.  In modern brewing many of the original top fermentation strains have been modified to be bottom fermenters. Currently the ''S. carlsbergensis'' designation is not used, the ''S. cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the flour or added to the dough. This fermentation gives off carbon dioxide and ethanol.  The carbon dioxide is trapped within tiny bubbles and results in the dough expanding, or rising. Sourdough bread, is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco sourdough cultures is about 1:100. The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast present in the vineyards. Many wineries still use natural strains, however many use modern methods of strain maintenance and isolation.  The bubbles in sparkling wines is trapped carbon dioxide, the result of yeast fermenting sugars in the grape juice.  One yeast cell can ferment approximately its own weight of glucose per hour.  Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm.  The sulfur dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria, mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
In addition to playing a major role in baking, brewing, and wine making, the in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms and in 1996, it was the first eukaryote to have its genome completely sequenced.  Several significant scientific discoveries have been made by studying ''S. cerevisiae'', including some which have led to Nobel Prizes, such as the discovery of genes specifically involved in regulating the cell cycle and the discovery of telomeres and the enzyme telomerase that are central to protecting the ends of chromosomes from degradation.&lt;br /&gt;
&lt;br /&gt;
==Resources==&lt;br /&gt;
&lt;br /&gt;
* [http://www.yeastgenome.org/ ''Saccharomyces'' Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
* [http://www.candidagenome.org/ ''Candida'' Genome Database (CGD)], a resource for genomic sequence data and gene and protein information for Candida albicans. &lt;br /&gt;
&lt;br /&gt;
* [http://www.pombase.org/ PomBase], a comprehensive database for the fission yeast ''Schizosaccharomyces pombe'', providing structural and functional annotation, literature curation and access to large-scale data sets.&lt;br /&gt;
&lt;br /&gt;
* [http://www.ncbi.nlm.nih.gov/projects/genome/guide/fungi/ Fungal Genomes Central], a portal to information and resources about fungi and fungal sequencing projects from NCBI and the fungi research community.&lt;br /&gt;
&lt;br /&gt;
* An extensive list of [http://wiki.yeastgenome.org/index.php/External_Links yeast-related resources] on topics ranging from general yeast information to nucleic acids, genomes and proteins, expression data, localization, phenotypes and more.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/content/189/3/695.full.pdf+html Yeast: An Experimental Organism for 21st Century Biology].  (2011) David Botstein &amp;amp; Gerald R Fink, Genetics. 2011 Nov;189(3):695-704.&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/site/misc/yeastbook.xhtml YeastBook]. (2011) ''A comprehensive compendium of reviews that presents the current state of knowledge of the molecular biology, cellular biology, and genetics of the yeast Saccharomyces cerevisiae'', Genetics&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/From_a_to_alpha.html?id=79hO0A08odkC From a to alpha: Yeast as a Model for Cellular Differentiation]. (2007) Hitan D. Madhani, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=449&amp;amp;newtitle=Landmark%20Papers%20in%20Yeast%20Biology Landmark Papers in Yeast Biology]. (2006), edited by Patrick Linder, David Shore, and Michael N. Hall, Cold Spring Harbor Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=526&amp;amp;newtitle=Methods%20in%20Yeast%20Genetics%3A%20A%20Cold%20Spring%20%20Harbor%20Laboratory%20Course%20Manual%2C%202005%20Edition Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual]. (2005) David C. Amberg, Daniel J. Burke, and Jeffrey N. Strathern.  Cold Spring Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?cart=133468183249354789&amp;amp;fromlink=T&amp;amp;linkaction=full&amp;amp;linksortby=oop_title&amp;amp;--eqSKUdatarq=676 The Early Days of Yeast Genetics]. (1993) edited by Michael N. Hall and Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468299549480865&amp;amp;--eqskudatarq=189&amp;amp;newtitle=The%20Yeast%20Saccharomyces%3A%20Gene%20Expression The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression]. (1992) edited by Elizabeth W. Jones, John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) [http://www.ncbi.nlm.nih.gov/pubmed/1413997 Genetic and physical maps of ''Saccharomyces cerevisiae''], Edition 11.  Yeast '''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;--eqskudatarq=190 The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics]. (1991) edited by James R. Broach, John R. Pringle, and Elizabeth W. Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/Yeast.html?id=-GkHRQAACAAJ Yeast: A Practical Approach]. (1988) edited by I. Campbell and , and John H. Duffus, IRL Press, Ithaca, New York.&lt;br /&gt;
&lt;br /&gt;
* The Life of Yeasts. (1978) H.J. Phaff, M.W. Miller, and E. M. Mrak, Harvard University Press, Cambridge, Massachussetts.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367523</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367523"/>
		<updated>2012-04-18T16:20:57Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Commercial Applications */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' is one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the Carlsberg Brewery in Copenhagen, where it was first isolated in pure culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the production of several types of beers including lagers.  ''S. carlsbergensis'' is used for bottom fermentation.  ''S. cerevisiae'' is used for the production of ales and conducts top fermentation, in which the yeast rise to the surface of the brewing vessel.  In modern brewing many of the original top fermentation strains have been modified to be bottom fermenters. Currently the ''S. carlsbergensis'' designation is not used, the ''S. cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the flour or added to the dough. This fermentation gives off carbon dioxide and ethanol.  The carbon dioxide is trapped within tiny bubbles and results in the dough expanding, or rising. Sourdough bread, is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco sourdough cultures is about 1:100. The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast present in the vineyards. Many wineries still use natural strains, however many use modern methods of strain maintenance and isolation.  The bubbles in sparkling wines is trapped carbon dioxide, the result of yeast fermenting sugars in the grape juice.  One yeast cell can ferment approximately its own weight of glucose per hour.  Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm.  The sulfur dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria, mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
In addition to playing a major role in baking, brewing, and wine making, the in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Resources==&lt;br /&gt;
&lt;br /&gt;
* [http://www.yeastgenome.org/ ''Saccharomyces'' Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
* [http://www.candidagenome.org/ ''Candida'' Genome Database (CGD)], a resource for genomic sequence data and gene and protein information for Candida albicans. &lt;br /&gt;
&lt;br /&gt;
* [http://www.pombase.org/ PomBase], a comprehensive database for the fission yeast ''Schizosaccharomyces pombe'', providing structural and functional annotation, literature curation and access to large-scale data sets.&lt;br /&gt;
&lt;br /&gt;
* [http://www.ncbi.nlm.nih.gov/projects/genome/guide/fungi/ Fungal Genomes Central], a portal to information and resources about fungi and fungal sequencing projects from NCBI and the fungi research community.&lt;br /&gt;
&lt;br /&gt;
* An extensive list of [http://wiki.yeastgenome.org/index.php/External_Links yeast-related resources] on topics ranging from general yeast information to nucleic acids, genomes and proteins, expression data, localization, phenotypes and more.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/content/189/3/695.full.pdf+html Yeast: An Experimental Organism for 21st Century Biology].  (2011) David Botstein &amp;amp; Gerald R Fink, Genetics. 2011 Nov;189(3):695-704.&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/site/misc/yeastbook.xhtml YeastBook]. (2011) ''A comprehensive compendium of reviews that presents the current state of knowledge of the molecular biology, cellular biology, and genetics of the yeast Saccharomyces cerevisiae'', Genetics&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/From_a_to_alpha.html?id=79hO0A08odkC From a to alpha: Yeast as a Model for Cellular Differentiation]. (2007) Hitan D. Madhani, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=449&amp;amp;newtitle=Landmark%20Papers%20in%20Yeast%20Biology Landmark Papers in Yeast Biology]. (2006), edited by Patrick Linder, David Shore, and Michael N. Hall, Cold Spring Harbor Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=526&amp;amp;newtitle=Methods%20in%20Yeast%20Genetics%3A%20A%20Cold%20Spring%20%20Harbor%20Laboratory%20Course%20Manual%2C%202005%20Edition Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual]. (2005) David C. Amberg, Daniel J. Burke, and Jeffrey N. Strathern.  Cold Spring Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?cart=133468183249354789&amp;amp;fromlink=T&amp;amp;linkaction=full&amp;amp;linksortby=oop_title&amp;amp;--eqSKUdatarq=676 The Early Days of Yeast Genetics]. (1993) edited by Michael N. Hall and Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468299549480865&amp;amp;--eqskudatarq=189&amp;amp;newtitle=The%20Yeast%20Saccharomyces%3A%20Gene%20Expression The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression]. (1992) edited by Elizabeth W. Jones, John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) [http://www.ncbi.nlm.nih.gov/pubmed/1413997 Genetic and physical maps of ''Saccharomyces cerevisiae''], Edition 11.  Yeast '''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;--eqskudatarq=190 The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics]. (1991) edited by James R. Broach, John R. Pringle, and Elizabeth W. Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/Yeast.html?id=-GkHRQAACAAJ Yeast: A Practical Approach]. (1988) edited by I. Campbell and , and John H. Duffus, IRL Press, Ithaca, New York.&lt;br /&gt;
&lt;br /&gt;
* The Life of Yeasts. (1978) H.J. Phaff, M.W. Miller, and E. M. Mrak, Harvard University Press, Cambridge, Massachussetts.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367352</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367352"/>
		<updated>2012-04-17T20:34:58Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Resources */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the Carlsberg Brewery in Copenhagen, where it was first isolated in pure culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the production of several types of beers including lagers.  ''S. carlsbergensis'' is used for bottom fermentation.  ''S. cerevisiae'' is used for the production of ales and conducts top fermentation, in which the yeast rise to the surface of the brewing vessel.  In modern brewing many of the original top fermentation strains have been modified to be bottom fermenters. Currently the ''S. carlsbergensis'' designation is not used, the ''S. cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the flour or added to the dough. This fermentation gives off carbon dioxide and ethanol.  The carbon dioxide is trapped within tiny bubbles and results in the dough expanding, or rising. Sourdough bread, is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco sourdough cultures is about 1:100. The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast present in the vineyards. Many wineries still use natural strains, however many use modern methods of strain maintenance and isolation.  The bubbles in sparkling wines is trapped carbon dioxide, the result of yeast fermenting sugars in the grape juice.  One yeast cell can ferment approximately its own weight of glucose per hour.  Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm.  The sulfur dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria, mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
In addition to playing a major role in baking, brewing, and wine making, the in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Resources==&lt;br /&gt;
&lt;br /&gt;
* [http://www.yeastgenome.org/ ''Saccharomyces'' Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
* [http://www.candidagenome.org/ ''Candida'' Genome Database (CGD)], a resource for genomic sequence data and gene and protein information for Candida albicans. &lt;br /&gt;
&lt;br /&gt;
* [http://www.pombase.org/ PomBase], a comprehensive database for the fission yeast ''Schizosaccharomyces pombe'', providing structural and functional annotation, literature curation and access to large-scale data sets.&lt;br /&gt;
&lt;br /&gt;
* [http://www.ncbi.nlm.nih.gov/projects/genome/guide/fungi/ Fungal Genomes Central], a portal to information and resources about fungi and fungal sequencing projects from NCBI and the fungi research community.&lt;br /&gt;
&lt;br /&gt;
* An extensive list of [http://wiki.yeastgenome.org/index.php/External_Links yeast-related resources] on topics ranging from general yeast information to nucleic acids, genomes and proteins, expression data, localization, phenotypes and more.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/content/189/3/695.full.pdf+html Yeast: An Experimental Organism for 21st Century Biology].  (2011) David Botstein &amp;amp; Gerald R Fink, Genetics. 2011 Nov;189(3):695-704.&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/site/misc/yeastbook.xhtml YeastBook]. (2011) ''A comprehensive compendium of reviews that presents the current state of knowledge of the molecular biology, cellular biology, and genetics of the yeast Saccharomyces cerevisiae'', Genetics&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/From_a_to_alpha.html?id=79hO0A08odkC From a to alpha: Yeast as a Model for Cellular Differentiation]. (2007) Hitan D. Madhani, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=449&amp;amp;newtitle=Landmark%20Papers%20in%20Yeast%20Biology Landmark Papers in Yeast Biology]. (2006), edited by Patrick Linder, David Shore, and Michael N. Hall, Cold Spring Harbor Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=526&amp;amp;newtitle=Methods%20in%20Yeast%20Genetics%3A%20A%20Cold%20Spring%20%20Harbor%20Laboratory%20Course%20Manual%2C%202005%20Edition Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual]. (2005) David C. Amberg, Daniel J. Burke, and Jeffrey N. Strathern.  Cold Spring Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?cart=133468183249354789&amp;amp;fromlink=T&amp;amp;linkaction=full&amp;amp;linksortby=oop_title&amp;amp;--eqSKUdatarq=676 The Early Days of Yeast Genetics]. (1993) edited by Michael N. Hall and Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468299549480865&amp;amp;--eqskudatarq=189&amp;amp;newtitle=The%20Yeast%20Saccharomyces%3A%20Gene%20Expression The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression]. (1992) edited by Elizabeth W. Jones, John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) [http://www.ncbi.nlm.nih.gov/pubmed/1413997 Genetic and physical maps of ''Saccharomyces cerevisiae''], Edition 11.  Yeast '''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;--eqskudatarq=190 The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics]. (1991) edited by James R. Broach, John R. Pringle, and Elizabeth W. Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/Yeast.html?id=-GkHRQAACAAJ Yeast: A Practical Approach]. (1988) edited by I. Campbell and , and John H. Duffus, IRL Press, Ithaca, New York.&lt;br /&gt;
&lt;br /&gt;
* The Life of Yeasts. (1978) H.J. Phaff, M.W. Miller, and E. M. Mrak, Harvard University Press, Cambridge, Massachussetts.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367347</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367347"/>
		<updated>2012-04-17T18:22:25Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Resources */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the Carlsberg Brewery in Copenhagen, where it was first isolated in pure culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the production of several types of beers including lagers.  ''S. carlsbergensis'' is used for bottom fermentation.  ''S. cerevisiae'' is used for the production of ales and conducts top fermentation, in which the yeast rise to the surface of the brewing vessel.  In modern brewing many of the original top fermentation strains have been modified to be bottom fermenters. Currently the ''S. carlsbergensis'' designation is not used, the ''S. cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the flour or added to the dough. This fermentation gives off carbon dioxide and ethanol.  The carbon dioxide is trapped within tiny bubbles and results in the dough expanding, or rising. Sourdough bread, is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco sourdough cultures is about 1:100. The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast present in the vineyards. Many wineries still use natural strains, however many use modern methods of strain maintenance and isolation.  The bubbles in sparkling wines is trapped carbon dioxide, the result of yeast fermenting sugars in the grape juice.  One yeast cell can ferment approximately its own weight of glucose per hour.  Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm.  The sulfur dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria, mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
In addition to playing a major role in baking, brewing, and wine making, the in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Resources====&lt;br /&gt;
&lt;br /&gt;
[http://www.yeastgenome.org/ ''Saccharomyces'' Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
[http://www.candidagenome.org/ ''Candida'' Genome Database (CGD)], a resource for genomic sequence data and gene and protein information for Candida albicans. &lt;br /&gt;
&lt;br /&gt;
[http://www.pombase.org/ PomBase], a comprehensive database for the fission yeast ''Schizosaccharomyces pombe'', providing structural and functional annotation, literature curation and access to large-scale data sets.&lt;br /&gt;
&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/projects/genome/guide/fungi/ Fungal Genomes Central], a portal to information and resources about fungi and fungal sequencing projects from NCBI and the fungi research community.&lt;br /&gt;
&lt;br /&gt;
An extensive list of [http://wiki.yeastgenome.org/index.php/External_Links yeast-related resources] on topics ranging from general yeast information to nucleic acids, genomes and proteins, expression data, localization and phenotypes.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/content/189/3/695.full.pdf+html Yeast: An Experimental Organism for 21st Century Biology].  (2011) David Botstein &amp;amp; Gerald R Fink, Genetics. 2011 Nov;189(3):695-704.&lt;br /&gt;
&lt;br /&gt;
* [http://www.genetics.org/site/misc/yeastbook.xhtml YeastBook]. (2011) ''A comprehensive compendium of reviews that presents the current state of knowledge of the molecular biology, cellular biology, and genetics of the yeast Saccharomyces cerevisiae'', Genetics&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/From_a_to_alpha.html?id=79hO0A08odkC From a to alpha: Yeast as a Model for Cellular Differentiation]. (2007) Hitan D. Madhani, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=449&amp;amp;newtitle=Landmark%20Papers%20in%20Yeast%20Biology Landmark Papers in Yeast Biology]. (2006), edited by Patrick Linder, David Shore, and Michael N. Hall, Cold Spring Harbor Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468404249500843&amp;amp;--eqskudatarq=526&amp;amp;newtitle=Methods%20in%20Yeast%20Genetics%3A%20A%20Cold%20Spring%20%20Harbor%20Laboratory%20Course%20Manual%2C%202005%20Edition Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual]. (2005) David C. Amberg, Daniel J. Burke, and Jeffrey N. Strathern.  Cold Spring Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?cart=133468183249354789&amp;amp;fromlink=T&amp;amp;linkaction=full&amp;amp;linksortby=oop_title&amp;amp;--eqSKUdatarq=676 The Early Days of Yeast Genetics]. (1993) edited by Michael N. Hall and Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;cart=133468299549480865&amp;amp;--eqskudatarq=189&amp;amp;newtitle=The%20Yeast%20Saccharomyces%3A%20Gene%20Expression The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression]. (1992) edited by Elizabeth W. Jones, John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) [http://www.ncbi.nlm.nih.gov/pubmed/1413997 Genetic and physical maps of ''Saccharomyces cerevisiae''], Edition 11.  Yeast '''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cshlpress.com/default.tpl?action=full&amp;amp;--eqskudatarq=190 The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics]. (1991) edited by James R. Broach, John R. Pringle, and Elizabeth W. Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
* [http://books.google.com/books/about/Yeast.html?id=-GkHRQAACAAJ Yeast: A Practical Approach]. (1988) edited by I. Campbell and , and John H. Duffus, IRL Press, Ithaca, New York.&lt;br /&gt;
&lt;br /&gt;
* The Life of Yeasts. (1978) H.J. Phaff, M.W. Miller, and E. M. Mrak, Harvard University Press, Cambridge, Massachussetts.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367334</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367334"/>
		<updated>2012-04-17T16:35:00Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Resources */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the Carlsberg Brewery in Copenhagen, where it was first isolated in pure culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the production of several types of beers including lagers.  ''S. carlsbergensis'' is used for bottom fermentation.  ''S. cerevisiae'' is used for the production of ales and conducts top fermentation, in which the yeast rise to the surface of the brewing vessel.  In modern brewing many of the original top fermentation strains have been modified to be bottom fermenters. Currently the ''S. carlsbergensis'' designation is not used, the ''S. cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the flour or added to the dough. This fermentation gives off carbon dioxide and ethanol.  The carbon dioxide is trapped within tiny bubbles and results in the dough expanding, or rising. Sourdough bread, is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco sourdough cultures is about 1:100. The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast present in the vineyards. Many wineries still use natural strains, however many use modern methods of strain maintenance and isolation.  The bubbles in sparkling wines is trapped carbon dioxide, the result of yeast fermenting sugars in the grape juice.  One yeast cell can ferment approximately its own weight of glucose per hour.  Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm.  The sulfur dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria, mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
In addition to playing a major role in baking, brewing, and wine making, the in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Resources====&lt;br /&gt;
&lt;br /&gt;
[http://www.yeastgenome.org/ ''Saccharomyces'' Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
[http://www.candidagenome.org/ ''Candida'' Genome Database (CGD)], a resource for genomic sequence data and gene and protein information for Candida albicans. &lt;br /&gt;
&lt;br /&gt;
[http://www.pombase.org/ PomBase], a comprehensive database for the fission yeast ''Schizosaccharomyces pombe'', providing structural and functional annotation, literature curation and access to large-scale data sets.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988).&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978).&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367333</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367333"/>
		<updated>2012-04-17T16:33:32Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Resources */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the Carlsberg Brewery in Copenhagen, where it was first isolated in pure culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the production of several types of beers including lagers.  ''S. carlsbergensis'' is used for bottom fermentation.  ''S. cerevisiae'' is used for the production of ales and conducts top fermentation, in which the yeast rise to the surface of the brewing vessel.  In modern brewing many of the original top fermentation strains have been modified to be bottom fermenters. Currently the ''S. carlsbergensis'' designation is not used, the ''S. cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the flour or added to the dough. This fermentation gives off carbon dioxide and ethanol.  The carbon dioxide is trapped within tiny bubbles and results in the dough expanding, or rising. Sourdough bread, is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco sourdough cultures is about 1:100. The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast present in the vineyards. Many wineries still use natural strains, however many use modern methods of strain maintenance and isolation.  The bubbles in sparkling wines is trapped carbon dioxide, the result of yeast fermenting sugars in the grape juice.  One yeast cell can ferment approximately its own weight of glucose per hour.  Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm.  The sulfur dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria, mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
In addition to playing a major role in baking, brewing, and wine making, the in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Resources====&lt;br /&gt;
&lt;br /&gt;
[http://www.yeastgenome.org/ ''Saccharomyces'' Genome Database (SGD)]; provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
[http://www.candidagenome.org/ ''Candida'' Genome Database (CGD)];&lt;br /&gt;
&lt;br /&gt;
[http://www.pombase.org/ PomBase]; A comprehensive database for the fission yeast ''Schizosaccharomyces pombe'', providing structural and functional annotation, literature curation and access to large-scale data sets.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988).&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978).&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367332</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=367332"/>
		<updated>2012-04-17T16:30:04Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide. &lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|right|130px|''C. albicans'', Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|left|150px|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']] &lt;br /&gt;
&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|175px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cell's tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the Carlsberg Brewery in Copenhagen, where it was first isolated in pure culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the production of several types of beers including lagers.  ''S. carlsbergensis'' is used for bottom fermentation.  ''S. cerevisiae'' is used for the production of ales and conducts top fermentation, in which the yeast rise to the surface of the brewing vessel.  In modern brewing many of the original top fermentation strains have been modified to be bottom fermenters. Currently the ''S. carlsbergensis'' designation is not used, the ''S. cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the flour or added to the dough. This fermentation gives off carbon dioxide and ethanol.  The carbon dioxide is trapped within tiny bubbles and results in the dough expanding, or rising. Sourdough bread, is not produced with baker's yeast, rather a combination of wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco sourdough cultures is about 1:100. The ''C. milleri'' strengthens the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast present in the vineyards. Many wineries still use natural strains, however many use modern methods of strain maintenance and isolation.  The bubbles in sparkling wines is trapped carbon dioxide, the result of yeast fermenting sugars in the grape juice.  One yeast cell can ferment approximately its own weight of glucose per hour.  Under optimal conditions ''S. cerevisiae'' can produce up to 18 percent, by volume, ethanol with 15 to 16 percent being the norm.  The sulfur dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria, mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
In addition to playing a major role in baking, brewing, and wine making, the in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Resources====&lt;br /&gt;
&lt;br /&gt;
[http://www.yeastgenome.org/ Saccharomyces Genome Database (SGD)]: provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988).&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978).&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366691</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366691"/>
		<updated>2012-04-14T01:03:31Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Commercial Applications */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cells tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
In addition to playing a major role in baking, brewing, and wine making, the in-depth knowledge of ''S. cerevisiae'' and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
The [http://www.yeastgenome.org/ Saccharomyces Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366690</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366690"/>
		<updated>2012-04-14T01:01:45Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Commercial Applications */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cells tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
In addition to playing a major role in baking, brewing, and wine making, the in-depth knowledge of ''S. cerevisiae''and it's ability to be metabolically engineered has made it an important organism in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
The [http://www.yeastgenome.org/ Saccharomyces Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366689</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366689"/>
		<updated>2012-04-14T00:47:01Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Commercial Applications */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cells tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
In addition to playing a major role in baking, brewing, and wine making, the ability to metabolically engineer ''S. cerevisiae'', has also made it a big player in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
The [http://www.yeastgenome.org/ Saccharomyces Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366688</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366688"/>
		<updated>2012-04-14T00:44:58Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Commercial Applications */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cells tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
In addition to playing a major role in baking, wine making, and brewing, the ability to metabolic engineer S, cerevisiae, has also made it a big player in the production of specialty chemicals, such as biofuels, industrial lubricants, detergents, and biopharmaceuticals.&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
The [http://www.yeastgenome.org/ Saccharomyces Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366687</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366687"/>
		<updated>2012-04-14T00:12:48Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* General Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']), by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']), or they can grow as simple irregular filaments (mycelium). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cells tips and then divides in half to produce two daughter cells of equal size.  Yeast can also reproduce sexually, and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
The [http://www.yeastgenome.org/ Saccharomyces Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366686</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366686"/>
		<updated>2012-04-14T00:07:28Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* General Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']) or by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the rod shaped cell grows at the cells tips and then divides in half to produce two daughter cells of equal size. Yeast can also grow as simple irregular filaments (mycelium).   Yeast can also reproduce sexually and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
The [http://www.yeastgenome.org/ Saccharomyces Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366685</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366685"/>
		<updated>2012-04-14T00:01:47Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* General Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']) or by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the cell divides in half to produce two daughter cells of equal size. Yeast can also grow as simple irregular filaments (mycelium).   Yeast can also reproduce sexually and most do so my forming asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
The [http://www.yeastgenome.org/ Saccharomyces Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366684</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366684"/>
		<updated>2012-04-13T23:57:25Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* General Information */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms, as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota ''Basidiomycota''].  Budding yeast (also called “true yeasts”), such as the well-known species [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''], are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''] under the phylum ''Ascomycota''. Such classifications are based on characteristics of the cell, ascospore, and colony, as well as on physiology. One of the most well known characteristics of yeast is its ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast reproduce asexually by an asymmetric division process called budding (eg. [http://en.wikipedia.org/wiki/Saccharomyces ''Saccharomyces'']) or by a symmetric division process called fission (eg. [http://en.wikipedia.org/wiki/Schizosaccharomyces ''Schizosaccharomyces'']). In budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent, while in fission the cell divides in half to produce two daughter cells of equal size. Yeast may also grow as simple irregular filaments (mycelium).   In sexual reproduction, most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x150px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often [http://en.wikipedia.org/wiki/Candida_milleri ''Candida milleri'']) and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|150px|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
The [http://www.yeastgenome.org/ Saccharomyces Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366344</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366344"/>
		<updated>2012-04-11T21:39:56Z</updated>

		<summary type="html">&lt;p&gt;Cindy: /* Yeast as a Model Organism */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as the well-known species, [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota. Such classifications are based on characteristics of the cell, ascospore and colony as well as physiology. One of the most well known characteristics of yeast is the ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by asymmetric budding (eg. ''Saccharomyces'') or by direct division (fission, eg. ''Schizosaccharomyces''); they may also grow as simple irregular filaments (mycelium).  In the budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly, ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single-celled eukaryote that is fairly easy to manipulate and grow, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and more complex eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several significant scientific discoveries have been made by studying ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
The [http://www.yeastgenome.org/ Saccharomyces Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366343</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366343"/>
		<updated>2012-04-11T21:32:28Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as the well-known species, [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota. Such classifications are based on characteristics of the cell, ascospore and colony as well as physiology. One of the most well known characteristics of yeast is the ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by asymmetric budding (eg. ''Saccharomyces'') or by direct division (fission, eg. ''Schizosaccharomyces''); they may also grow as simple irregular filaments (mycelium).  In the budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
Yeast, particularly, ''S. cerevisiae'', became a model organism for studying cell biology and genetics because it is a single eukaryotic cell that is fairly easy to manipulate and study, and the basic cellular mechanics of replication, recombination, cell division and metabolism are generally conserved between it and larger eukaryotes, including humans.  As a result it is one of the most thoroughly researched eukaryotic organisms.  Several  scientific discoveries have been made in ''S. cerevisiae''.&lt;br /&gt;
&lt;br /&gt;
The [http://www.yeastgenome.org/ Saccharomyces Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366342</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366342"/>
		<updated>2012-04-11T21:18:17Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as the well-known species, [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota. Such classifications are based on characteristics of the cell, ascospore and colony as well as physiology. One of the most well known characteristics of yeast is the ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by asymmetric budding (eg. ''Saccharomyces'') or by direct division (fission, eg. ''Schizosaccharomyces''); they may also grow as simple irregular filaments (mycelium).  In the budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Yeast as a Model Organism====&lt;br /&gt;
The awesome power of yeast genetics is partially due to the ability to&lt;br /&gt;
quickly map a phenotype producing gene to a region of the ''S.&lt;br /&gt;
cerevisiae'' genome.  For the past two decades ''S. cerevisiae''&lt;br /&gt;
has been the model system for much of molecular genetic research&lt;br /&gt;
because the basic cellular mechanics of replication, recombination,&lt;br /&gt;
cell division and metabolism are generally conserved between yeast and&lt;br /&gt;
larger eukaryotes, including mammals.&lt;br /&gt;
&lt;br /&gt;
The [http://www.yeastgenome.org/ Saccharomyces Genome Database (SGD)] provides comprehensive integrated biological information for the budding yeast ''Saccharomyces cerevisiae'' along with search and analysis tools to explore these data.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366341</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366341"/>
		<updated>2012-04-11T21:15:54Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as the well-known species, [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota. Such classifications are based on characteristics of the cell, ascospore and colony as well as physiology. One of the most well known characteristics of yeast is the ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by asymmetric budding (eg. ''Saccharomyces'') or by direct division (fission, eg. ''Schizosaccharomyces''); they may also grow as simple irregular filaments (mycelium).  In the budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. &lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Model Organism====&lt;br /&gt;
The awesome power of yeast genetics is partially due to the ability to&lt;br /&gt;
quickly map a phenotype producing gene to a region of the ''S.&lt;br /&gt;
cerevisiae'' genome.  For the past two decades ''S. cerevisiae''&lt;br /&gt;
has been the model system for much of molecular genetic research&lt;br /&gt;
because the basic cellular mechanics of replication, recombination,&lt;br /&gt;
cell division and metabolism are generally conserved between yeast and&lt;br /&gt;
larger eukaryotes, including mammals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366340</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366340"/>
		<updated>2012-04-11T21:13:58Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
====General Information====&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as the well-known species, [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota. Such classifications are based on characteristics of the cell, ascospore and colony as well as physiology. One of the most well known characteristics of yeast is the ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by asymmetric budding (eg. ''Saccharomyces'') or by direct division (fission, eg. ''Schizosaccharomyces''); they may also grow as simple irregular filaments (mycelium).  In the budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats. They are common on plant leaves, flowers, and fruits, as well as in soil.  Yeast are also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
====Commercial Applications==== &lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. For&lt;br /&gt;
more information about sourdough see [http://www.faqs.org/faqs/food/sourdough/faq/preamble.html rec.food.sourdough FAQ].&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====Model Organism====&lt;br /&gt;
The awesome power of yeast genetics is partially due to the ability to&lt;br /&gt;
quickly map a phenotype producing gene to a region of the ''S.&lt;br /&gt;
cerevisiae'' genome.  For the past two decades ''S. cerevisiae''&lt;br /&gt;
has been the model system for much of molecular genetic research&lt;br /&gt;
because the basic cellular mechanics of replication, recombination,&lt;br /&gt;
cell division and metabolism are generally conserved between yeast and&lt;br /&gt;
larger eukaryotes, including mammals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366339</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366339"/>
		<updated>2012-04-11T21:01:33Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as the well-known species, [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota. Such classifications are based on characteristics of the cell, ascospore and colony as well as physiology. One of the most well known characteristics of yeast is the ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by asymmetric budding (eg. ''Saccharomyces'') or by direct division (fission, eg. ''Schizosaccharomyces''); they may also grow as simple irregular filaments (mycelium).  In the budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|left|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
Commercial Application&lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Model Organism&lt;br /&gt;
The awsome power of yeast genetics is partially due to the ability to&lt;br /&gt;
quickly map a phenotype producing gene to a region of the ''S.&lt;br /&gt;
cerevisiae'' genome.  For the past two decades ''S. cerevisiae''&lt;br /&gt;
has been the model system for much of molecular genetic research&lt;br /&gt;
because the basic cellular mechanics of replication, recombination,&lt;br /&gt;
cell division and metabolism are generally conserved between yeast and&lt;br /&gt;
larger eukaryotes, including mammals.&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. For&lt;br /&gt;
more information about sourdough see [http://www.faqs.org/faqs/food/sourdough/faq/preamble.html rec.food.sourdough FAQ].&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|left|150px|'''''C. albicans''''' Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats.&lt;br /&gt;
Common on plant leaves and flowers, soil and salt water.  Yeast are&lt;br /&gt;
also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as&lt;br /&gt;
parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366338</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366338"/>
		<updated>2012-04-11T20:59:06Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and as such are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as the well-known species, [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota. Such classifications are based on characteristics of the cell, ascospore and colony as well as physiology. One of the most well known characteristics of yeast is the ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by asymmetric budding (eg. ''Saccharomyces'') or by direct division (fission, eg. ''Schizosaccharomyces''); they may also grow as simple irregular filaments (mycelium).  In the budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|left|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The awsome power of yeast genetics is partially due to the ability to&lt;br /&gt;
quickly map a phenotype producing gene to a region of the ''S.&lt;br /&gt;
cerevisiae'' genome.  For the past two decades ''S. cerevisiae''&lt;br /&gt;
has been the model system for much of molecular genetic research&lt;br /&gt;
because the basic cellular mechanics of replication, recombination,&lt;br /&gt;
cell division and metabolism are generally conserved between yeast and&lt;br /&gt;
larger eukaryotes, including mammals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The most well-known and commercially significant yeast are the&lt;br /&gt;
related species and strains of [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''].  These organisms have long been utilized to ferment the sugars of rice,&lt;br /&gt;
wheat, barley, and corn to produce alcoholic beverages and in the&lt;br /&gt;
baking industry to expand, or raise, dough.  ''Saccharomyces&lt;br /&gt;
cerevisiae'' is commonly used as baker's yeast and for some types of&lt;br /&gt;
fermentation. Yeast is often taken as a vitamin supplement because it&lt;br /&gt;
is 50 percent protein and is a rich source of B vitamins such as&lt;br /&gt;
niacin, folic acid, riboflavin, and biotin.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. For&lt;br /&gt;
more information about sourdough see [http://www.faqs.org/faqs/food/sourdough/faq/preamble.html rec.food.sourdough FAQ].&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|left|150px|'''''C. albicans''''' Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats.&lt;br /&gt;
Common on plant leaves and flowers, soil and salt water.  Yeast are&lt;br /&gt;
also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as&lt;br /&gt;
parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366337</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366337"/>
		<updated>2012-04-11T20:39:45Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and consequently are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as the well-known species, [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota. Classifications, such as these are based on characteristics of the cell, ascospore and colony. Physiological characteristics are also used to identify species. One of the most well known characteristics of yeast is the ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by budding (eg. ''Saccharomyces'') or direct division (fission, eg. ''Schizosaccharomyces''), or they may grow as simple irregular filaments (mycelium).  In the asymmetric process of budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
Most yeast reproduce asexually by an asymmetric division process called budding rather than by binary fission.  A small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats.&lt;br /&gt;
Common on plant leaves and flowers, soil and salt water.  Yeast are&lt;br /&gt;
also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as&lt;br /&gt;
parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by the yeast-like fungus [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The awsome power of yeast genetics is partially due to the ability to&lt;br /&gt;
quickly map a phenotype producing gene to a region of the ''S.&lt;br /&gt;
cerevisiae'' genome.  For the past two decades ''S. cerevisiae''&lt;br /&gt;
has been the model system for much of molecular genetic research&lt;br /&gt;
because the basic cellular mechanics of replication, recombination,&lt;br /&gt;
cell division and metabolism are generally conserved between yeast and&lt;br /&gt;
larger eukaryotes, including mammals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The most well-known and commercially significant yeast are the&lt;br /&gt;
related species and strains of [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''].  These organisms have long been utilized to ferment the sugars of rice,&lt;br /&gt;
wheat, barley, and corn to produce alcoholic beverages and in the&lt;br /&gt;
baking industry to expand, or raise, dough.  ''Saccharomyces&lt;br /&gt;
cerevisiae'' is commonly used as baker's yeast and for some types of&lt;br /&gt;
fermentation. Yeast is often taken as a vitamin supplement because it&lt;br /&gt;
is 50 percent protein and is a rich source of B vitamins such as&lt;br /&gt;
niacin, folic acid, riboflavin, and biotin.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. For&lt;br /&gt;
more information about sourdough see [http://www.faqs.org/faqs/food/sourdough/faq/preamble.html rec.food.sourdough FAQ].&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|left|'''Bunches of grapes on vines at Trinity Hill vineyard in Hawkes Bay NZ''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|left|150px|'''''C. albicans''''' Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
The yeast-like fungus, ''Candida albicans'', is commonly found in&lt;br /&gt;
the mouth, vagina, and intestinal tract.  ''Candida'' is a normal&lt;br /&gt;
inhabitant of humans and normally causes no ill effects.  However,&lt;br /&gt;
among infants and individuals with other illness a variety of&lt;br /&gt;
conditions can occur.  Candidiasis of the mucous membranes of the&lt;br /&gt;
mouth is known as thrush.  Candidiasis of the vagina is called&lt;br /&gt;
vaginitis.  ''Candida'' also causes severe disease in persons with&lt;br /&gt;
AIDS and chemotherapy patients.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=File:Bunches_of_grapes_on_vines_at_Trinity_Hill_vineyard_in_the_Gimblett_Gravels_region_Hawkes_Bay_NZ_13-15Feb08.jpg&amp;diff=366336</id>
		<title>File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=File:Bunches_of_grapes_on_vines_at_Trinity_Hill_vineyard_in_the_Gimblett_Gravels_region_Hawkes_Bay_NZ_13-15Feb08.jpg&amp;diff=366336"/>
		<updated>2012-04-11T20:38:27Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366335</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366335"/>
		<updated>2012-04-11T17:57:45Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and consequently are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as the well-known species, [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota. Classifications, such as these are based on characteristics of the cell, ascospore and colony. Physiological characteristics are also used to identify species. One of the most well known characteristics of yeast is the ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by budding (eg. ''Saccharomyces'') or direct division (fission, eg. ''Schizosaccharomyces''), or they may grow as simple irregular filaments (mycelium).  In the asymmetric process of budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
Most yeast reproduce asexually by an asymmetric division process called budding rather than by binary fission.  A small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats.&lt;br /&gt;
Common on plant leaves and flowers, soil and salt water.  Yeast are&lt;br /&gt;
also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as&lt;br /&gt;
parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by the yeast-like fungus [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The awsome power of yeast genetics is partially due to the ability to&lt;br /&gt;
quickly map a phenotype producing gene to a region of the ''S.&lt;br /&gt;
cerevisiae'' genome.  For the past two decades ''S. cerevisiae''&lt;br /&gt;
has been the model system for much of molecular genetic research&lt;br /&gt;
because the basic cellular mechanics of replication, recombination,&lt;br /&gt;
cell division and metabolism are generally conserved between yeast and&lt;br /&gt;
larger eukaryotes, including mammals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The most well-known and commercially significant yeast are the&lt;br /&gt;
related species and strains of [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''].  These organisms have long been utilized to ferment the sugars of rice,&lt;br /&gt;
wheat, barley, and corn to produce alcoholic beverages and in the&lt;br /&gt;
baking industry to expand, or raise, dough.  ''Saccharomyces&lt;br /&gt;
cerevisiae'' is commonly used as baker's yeast and for some types of&lt;br /&gt;
fermentation. Yeast is often taken as a vitamin supplement because it&lt;br /&gt;
is 50 percent protein and is a rich source of B vitamins such as&lt;br /&gt;
niacin, folic acid, riboflavin, and biotin.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. For&lt;br /&gt;
more information about sourdough see [http://www.faqs.org/faqs/food/sourdough/faq/preamble.html rec.food.sourdough FAQ].&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|thumb|left|'''Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ''' 13-15Feb08]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|left|150px|'''''C. albicans''''' Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
The yeast-like fungus, ''Candida albicans'', is commonly found in&lt;br /&gt;
the mouth, vagina, and intestinal tract.  ''Candida'' is a normal&lt;br /&gt;
inhabitant of humans and normally causes no ill effects.  However,&lt;br /&gt;
among infants and individuals with other illness a variety of&lt;br /&gt;
conditions can occur.  Candidiasis of the mucous membranes of the&lt;br /&gt;
mouth is known as thrush.  Candidiasis of the vagina is called&lt;br /&gt;
vaginitis.  ''Candida'' also causes severe disease in persons with&lt;br /&gt;
AIDS and chemotherapy patients.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366334</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366334"/>
		<updated>2012-04-11T17:52:02Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and consequently are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as the well-known species, [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota. Classifications, such as these are based on characteristics of the cell, ascospore and colony. Physiological characteristics are also used to identify species. One of the most well known characteristics of yeast is the ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by budding (eg. ''Saccharomyces'') or direct division (fission, eg. ''Schizosaccharomyces''), or they may grow as simple irregular filaments (mycelium).  In the asymmetric process of budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
Most yeast reproduce asexually by an asymmetric division process called budding rather than by binary fission.  A small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats.&lt;br /&gt;
Common on plant leaves and flowers, soil and salt water.  Yeast are&lt;br /&gt;
also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as&lt;br /&gt;
parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by the yeast-like fungus [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The awsome power of yeast genetics is partially due to the ability to&lt;br /&gt;
quickly map a phenotype producing gene to a region of the ''S.&lt;br /&gt;
cerevisiae'' genome.  For the past two decades ''S. cerevisiae''&lt;br /&gt;
has been the model system for much of molecular genetic research&lt;br /&gt;
because the basic cellular mechanics of replication, recombination,&lt;br /&gt;
cell division and metabolism are generally conserved between yeast and&lt;br /&gt;
larger eukaryotes, including mammals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The most well-known and commercially significant yeast are the&lt;br /&gt;
related species and strains of [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''].  These organisms have long been utilized to ferment the sugars of rice,&lt;br /&gt;
wheat, barley, and corn to produce alcoholic beverages and in the&lt;br /&gt;
baking industry to expand, or raise, dough.  ''Saccharomyces&lt;br /&gt;
cerevisiae'' is commonly used as baker's yeast and for some types of&lt;br /&gt;
fermentation. Yeast is often taken as a vitamin supplement because it&lt;br /&gt;
is 50 percent protein and is a rich source of B vitamins such as&lt;br /&gt;
niacin, folic acid, riboflavin, and biotin.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. For&lt;br /&gt;
more information about sourdough see [http://www.faqs.org/faqs/food/sourdough/faq/preamble.html rec.food.sourdough FAQ].&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
[[File:Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08.jpg|Bunches of grapes on vines at Trinity Hill vineyard in the Gimblett Gravels region Hawkes Bay NZ 13-15Feb08]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|left|150px|'''''C. albicans''''' Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
The yeast-like fungus, ''Candida albicans'', is commonly found in&lt;br /&gt;
the mouth, vagina, and intestinal tract.  ''Candida'' is a normal&lt;br /&gt;
inhabitant of humans and normally causes no ill effects.  However,&lt;br /&gt;
among infants and individuals with other illness a variety of&lt;br /&gt;
conditions can occur.  Candidiasis of the mucous membranes of the&lt;br /&gt;
mouth is known as thrush.  Candidiasis of the vagina is called&lt;br /&gt;
vaginitis.  ''Candida'' also causes severe disease in persons with&lt;br /&gt;
AIDS and chemotherapy patients.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366333</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366333"/>
		<updated>2012-04-11T17:48:39Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and consequently are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as the well-known species, [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota. Classifications, such as these are based on characteristics of the cell, ascospore and colony. Physiological characteristics are also used to identify species. One of the most well known characteristics of yeast is the ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by budding (eg. ''Saccharomyces'') or direct division (fission, eg. ''Schizosaccharomyces''), or they may grow as simple irregular filaments (mycelium).  In the asymmetric process of budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
Most yeast reproduce asexually by an asymmetric division process called budding rather than by binary fission.  A small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats.&lt;br /&gt;
Common on plant leaves and flowers, soil and salt water.  Yeast are&lt;br /&gt;
also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as&lt;br /&gt;
parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by the yeast-like fungus [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The awsome power of yeast genetics is partially due to the ability to&lt;br /&gt;
quickly map a phenotype producing gene to a region of the ''S.&lt;br /&gt;
cerevisiae'' genome.  For the past two decades ''S. cerevisiae''&lt;br /&gt;
has been the model system for much of molecular genetic research&lt;br /&gt;
because the basic cellular mechanics of replication, recombination,&lt;br /&gt;
cell division and metabolism are generally conserved between yeast and&lt;br /&gt;
larger eukaryotes, including mammals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The most well-known and commercially significant yeast are the&lt;br /&gt;
related species and strains of [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''].  These organisms have long been utilized to ferment the sugars of rice,&lt;br /&gt;
wheat, barley, and corn to produce alcoholic beverages and in the&lt;br /&gt;
baking industry to expand, or raise, dough.  ''Saccharomyces&lt;br /&gt;
cerevisiae'' is commonly used as baker's yeast and for some types of&lt;br /&gt;
fermentation. Yeast is often taken as a vitamin supplement because it&lt;br /&gt;
is 50 percent protein and is a rich source of B vitamins such as&lt;br /&gt;
niacin, folic acid, riboflavin, and biotin.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. For&lt;br /&gt;
more information about sourdough see [http://www.faqs.org/faqs/food/sourdough/faq/preamble.html rec.food.sourdough FAQ].&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|left|150px|'''''C. albicans''''' Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
The yeast-like fungus, ''Candida albicans'', is commonly found in&lt;br /&gt;
the mouth, vagina, and intestinal tract.  ''Candida'' is a normal&lt;br /&gt;
inhabitant of humans and normally causes no ill effects.  However,&lt;br /&gt;
among infants and individuals with other illness a variety of&lt;br /&gt;
conditions can occur.  Candidiasis of the mucous membranes of the&lt;br /&gt;
mouth is known as thrush.  Candidiasis of the vagina is called&lt;br /&gt;
vaginitis.  ''Candida'' also causes severe disease in persons with&lt;br /&gt;
AIDS and chemotherapy patients.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366332</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366332"/>
		<updated>2012-04-11T17:47:30Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and consequently are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as the well-known species, [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota. Classifications, such as these are based on characteristics of the cell, ascospore and colony. Physiological characteristics are also used to identify species. One of the most well known characteristics of yeast is the ability to ferment sugars for the production of ethanol and carbon dioxide.  &lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by budding (eg. ''Saccharomyces'') or direct division (fission, eg. ''Schizosaccharomyces''), or they may grow as simple irregular filaments (mycelium).  In the asymmetric process of budding, a small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
Most yeast reproduce asexually by an asymmetric division process called budding rather than by binary fission.  A small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are unicellular [http://en.wikipedia.org/wiki/Fungus fungi].  The precise&lt;br /&gt;
classification is a field that uses the characteristics of the cell,&lt;br /&gt;
ascospore and colony.  Physiological characteristics are also used to&lt;br /&gt;
identify species.  One of the more well known characteristics is the&lt;br /&gt;
ability to ferment sugars for the production of ethanol.  Budding&lt;br /&gt;
yeast are true fungi of the phylum [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''],&lt;br /&gt;
class [http://en.wikipedia.org/wiki/Saccharomycetes ''Saccharomycetes''] (also called ''Hemiascomycetes'').&lt;br /&gt;
The true yeast is separated into one main order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats.&lt;br /&gt;
Common on plant leaves and flowers, soil and salt water.  Yeast are&lt;br /&gt;
also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as&lt;br /&gt;
parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by the yeast-like fungus [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The awsome power of yeast genetics is partially due to the ability to&lt;br /&gt;
quickly map a phenotype producing gene to a region of the ''S.&lt;br /&gt;
cerevisiae'' genome.  For the past two decades ''S. cerevisiae''&lt;br /&gt;
has been the model system for much of molecular genetic research&lt;br /&gt;
because the basic cellular mechanics of replication, recombination,&lt;br /&gt;
cell division and metabolism are generally conserved between yeast and&lt;br /&gt;
larger eukaryotes, including mammals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The most well-known and commercially significant yeast are the&lt;br /&gt;
related species and strains of [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''].  Theseorganisms have long been utilized to ferment the sugars of rice,&lt;br /&gt;
wheat, barley, and corn to produce alcoholic beverages and in the&lt;br /&gt;
baking industry to expand, or raise, dough.  ''Saccharomyces&lt;br /&gt;
cerevisiae'' is commonly used as baker's yeast and for some types of&lt;br /&gt;
fermentation. Yeast is often taken as a vitamin supplement because it&lt;br /&gt;
is 50 percent protein and is a rich source of B vitamins such as&lt;br /&gt;
niacin, folic acid, riboflavin, and biotin.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been&lt;br /&gt;
reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. For&lt;br /&gt;
more information about sourdough see [http://www.faqs.org/faqs/food/sourdough/faq/preamble.html rec.food.sourdough FAQ].&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|left|150px|'''''C. albicans''''' Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
The yeast-like fungus, ''Candida albicans'', is commonly found in&lt;br /&gt;
the mouth, vagina, and intestinal tract.  ''Candida'' is a normal&lt;br /&gt;
inhabitant of humans and normally causes no ill effects.  However,&lt;br /&gt;
among infants and individuals with other illness a variety of&lt;br /&gt;
conditions can occur.  Candidiasis of the mucous membranes of the&lt;br /&gt;
mouth is known as thrush.  Candidiasis of the vagina is called&lt;br /&gt;
vaginitis.  ''Candida'' also causes severe disease in persons with&lt;br /&gt;
AIDS and chemotherapy patients.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366331</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366331"/>
		<updated>2012-04-11T17:41:28Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and consequently are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as the well-known species, [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota.  &lt;br /&gt;
&lt;br /&gt;
''Saccharomyces cerevisiae'' are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread. &lt;br /&gt;
&lt;br /&gt;
Most yeast reproduce asexually by an asymmetric division process called budding rather than by binary fission.  A small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Classifications, such as these are based on characteristics of the cell, ascospore and colony. Physiological characteristics are also used to identify species.  One of the most well known characteristics of yeast is the&lt;br /&gt;
ability to ferment sugars for the production of ethanol.  &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are unicellular [http://en.wikipedia.org/wiki/Fungus fungi].  The precise&lt;br /&gt;
classification is a field that uses the characteristics of the cell,&lt;br /&gt;
ascospore and colony.  Physiological characteristics are also used to&lt;br /&gt;
identify species.  One of the more well known characteristics is the&lt;br /&gt;
ability to ferment sugars for the production of ethanol.  Budding&lt;br /&gt;
yeast are true fungi of the phylum [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''],&lt;br /&gt;
class [http://en.wikipedia.org/wiki/Saccharomycetes ''Saccharomycetes''] (also called ''Hemiascomycetes'').&lt;br /&gt;
The true yeast is separated into one main order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats.&lt;br /&gt;
Common on plant leaves and flowers, soil and salt water.  Yeast are&lt;br /&gt;
also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as&lt;br /&gt;
parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by the yeast-like fungus [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by budding (eg. ''Saccharomyces'') or direct division (fission,&lt;br /&gt;
eg. ''Schizosaccharomyces''), or they may grow as simple irregular&lt;br /&gt;
filaments (mycelium).  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The awsome power of yeast genetics is partially due to the ability to&lt;br /&gt;
quickly map a phenotype producing gene to a region of the ''S.&lt;br /&gt;
cerevisiae'' genome.  For the past two decades ''S. cerevisiae''&lt;br /&gt;
has been the model system for much of molecular genetic research&lt;br /&gt;
because the basic cellular mechanics of replication, recombination,&lt;br /&gt;
cell division and metabolism are generally conserved between yeast and&lt;br /&gt;
larger eukaryotes, including mammals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The most well-known and commercially significant yeast are the&lt;br /&gt;
related species and strains of [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''].  Theseorganisms have long been utilized to ferment the sugars of rice,&lt;br /&gt;
wheat, barley, and corn to produce alcoholic beverages and in the&lt;br /&gt;
baking industry to expand, or raise, dough.  ''Saccharomyces&lt;br /&gt;
cerevisiae'' is commonly used as baker's yeast and for some types of&lt;br /&gt;
fermentation. Yeast is often taken as a vitamin supplement because it&lt;br /&gt;
is 50 percent protein and is a rich source of B vitamins such as&lt;br /&gt;
niacin, folic acid, riboflavin, and biotin.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been&lt;br /&gt;
reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. For&lt;br /&gt;
more information about sourdough see [http://www.faqs.org/faqs/food/sourdough/faq/preamble.html rec.food.sourdough FAQ].&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|left|150px|'''''C. albicans''''' Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
The yeast-like fungus, ''Candida albicans'', is commonly found in&lt;br /&gt;
the mouth, vagina, and intestinal tract.  ''Candida'' is a normal&lt;br /&gt;
inhabitant of humans and normally causes no ill effects.  However,&lt;br /&gt;
among infants and individuals with other illness a variety of&lt;br /&gt;
conditions can occur.  Candidiasis of the mucous membranes of the&lt;br /&gt;
mouth is known as thrush.  Candidiasis of the vagina is called&lt;br /&gt;
vaginitis.  ''Candida'' also causes severe disease in persons with&lt;br /&gt;
AIDS and chemotherapy patients.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366330</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366330"/>
		<updated>2012-04-11T17:28:55Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and consequently are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as the well-known species, [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota.  [http://en.wikipedia.org/wiki/Biological_classification Biological classification] is based on characteristics of the cell, ascospore and colony. Physiological characteristics are also used to identify species.  One of the most well known characteristics of yeast is the&lt;br /&gt;
ability to ferment sugars for the production of ethanol.  &lt;br /&gt;
&lt;br /&gt;
Saccharomyces cerevisiae are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread.&lt;br /&gt;
Most yeast reproduce asexually by an asymmetric division process called budding rather than by binary fission.  A small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are unicellular [http://en.wikipedia.org/wiki/Fungus fungi].  The precise&lt;br /&gt;
classification is a field that uses the characteristics of the cell,&lt;br /&gt;
ascospore and colony.  Physiological characteristics are also used to&lt;br /&gt;
identify species.  One of the more well known characteristics is the&lt;br /&gt;
ability to ferment sugars for the production of ethanol.  Budding&lt;br /&gt;
yeast are true fungi of the phylum [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''],&lt;br /&gt;
class [http://en.wikipedia.org/wiki/Saccharomycetes ''Saccharomycetes''] (also called ''Hemiascomycetes'').&lt;br /&gt;
The true yeast is separated into one main order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats.&lt;br /&gt;
Common on plant leaves and flowers, soil and salt water.  Yeast are&lt;br /&gt;
also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as&lt;br /&gt;
parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by the yeast-like fungus [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by budding (eg. ''Saccharomyces'') or direct division (fission,&lt;br /&gt;
eg. ''Schizosaccharomyces''), or they may grow as simple irregular&lt;br /&gt;
filaments (mycelium).  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The awsome power of yeast genetics is partially due to the ability to&lt;br /&gt;
quickly map a phenotype producing gene to a region of the ''S.&lt;br /&gt;
cerevisiae'' genome.  For the past two decades ''S. cerevisiae''&lt;br /&gt;
has been the model system for much of molecular genetic research&lt;br /&gt;
because the basic cellular mechanics of replication, recombination,&lt;br /&gt;
cell division and metabolism are generally conserved between yeast and&lt;br /&gt;
larger eukaryotes, including mammals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The most well-known and commercially significant yeast are the&lt;br /&gt;
related species and strains of [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''].  These&lt;br /&gt;
organisms have long been utilized to ferment the sugars of rice,&lt;br /&gt;
wheat, barley, and corn to produce alcoholic beverages and in the&lt;br /&gt;
baking industry to expand, or raise, dough.  ''Saccharomyces&lt;br /&gt;
cerevisiae'' is commonly used as baker's yeast and for some types of&lt;br /&gt;
fermentation. Yeast is often taken as a vitamin supplement because it&lt;br /&gt;
is 50 percent protein and is a rich source of B vitamins such as&lt;br /&gt;
niacin, folic acid, riboflavin, and biotin.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been&lt;br /&gt;
reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. For&lt;br /&gt;
more information about sourdough see [http://www.faqs.org/faqs/food/sourdough/faq/preamble.html rec.food.sourdough FAQ].&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|left|150px|'''''C. albicans''''' Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
The yeast-like fungus, ''Candida albicans'', is commonly found in&lt;br /&gt;
the mouth, vagina, and intestinal tract.  ''Candida'' is a normal&lt;br /&gt;
inhabitant of humans and normally causes no ill effects.  However,&lt;br /&gt;
among infants and individuals with other illness a variety of&lt;br /&gt;
conditions can occur.  Candidiasis of the mucous membranes of the&lt;br /&gt;
mouth is known as thrush.  Candidiasis of the vagina is called&lt;br /&gt;
vaginitis.  ''Candida'' also causes severe disease in persons with&lt;br /&gt;
AIDS and chemotherapy patients.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
	</entry>
	<entry>
		<id>https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366329</id>
		<title>What are yeast?</title>
		<link rel="alternate" type="text/html" href="https://wiki.yeastgenome.org/index.php?title=What_are_yeast%3F&amp;diff=366329"/>
		<updated>2012-04-11T17:25:04Z</updated>

		<summary type="html">&lt;p&gt;Cindy: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Fungi.jpeg|thumb|left|'''Introduction to Fungi''' Credit: ''Kandis Elliot, Mo Fayyaz, University of Wisconsin, Madison'']]&lt;br /&gt;
&lt;br /&gt;
[http://en.wikipedia.org/wiki/Yeast Yeast] are single-celled eukaryotic microorganisms that are classified, along with molds and mushrooms as members of the kingdom [http://en.wikipedia.org/wiki/Fungus Fungi].  Yeasts are phylogenetically diverse, and consequently are classified in two separate phyla, the [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''] and the [http://en.wikipedia.org/wiki/Basidiomycota Basidiomycota].  Budding yeast (also called “true yeasts”), such as [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''] are classified in the order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''], which is under Ascomycota.&lt;br /&gt;
&lt;br /&gt;
Saccharomyces cerevisiae are one of the most well-known and commercially significant species of yeast. These organisms have long been utilized to ferment the sugars of rice, wheat, barley, and corn to produce alcoholic beverages, and to expand and raise dough to make bread.&lt;br /&gt;
Most yeast reproduce asexually by an asymmetric division process called budding rather than by binary fission.  A small bud emerges from the surface of the parent cell and enlarges until it is almost the size of the parent.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are unicellular [http://en.wikipedia.org/wiki/Fungus fungi].  The precise&lt;br /&gt;
classification is a field that uses the characteristics of the cell,&lt;br /&gt;
ascospore and colony.  Physiological characteristics are also used to&lt;br /&gt;
identify species.  One of the more well known characteristics is the&lt;br /&gt;
ability to ferment sugars for the production of ethanol.  Budding&lt;br /&gt;
yeast are true fungi of the phylum [http://en.wikipedia.org/wiki/Ascomycota ''Ascomycota''],&lt;br /&gt;
class [http://en.wikipedia.org/wiki/Saccharomycetes ''Saccharomycetes''] (also called ''Hemiascomycetes'').&lt;br /&gt;
The true yeast is separated into one main order [http://en.wikipedia.org/wiki/Saccharomycetales ''Saccharomycetales''].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast are characterized by a wide dispersion of natural habitats.&lt;br /&gt;
Common on plant leaves and flowers, soil and salt water.  Yeast are&lt;br /&gt;
also found on the skin surfaces and in the intestinal tracts of&lt;br /&gt;
warm-blooded animals, where they may live symbiotically or as&lt;br /&gt;
parasites.  The common &amp;quot;yeast infection&amp;quot; [http://en.wikipedia.org/wiki/Candidiasis ''Candidiasis'']&lt;br /&gt;
is typically caused by the yeast-like fungus [http://en.wikipedia.org/wiki/Candida_albicans ''Candida albicans''].  In addition to being the causative agent in vaginal yeast infections ''Candida'' is also a cause of diaper rash and&lt;br /&gt;
thrush of the mouth and throat.&lt;br /&gt;
[[File:Pombe cerevisiae.jpg|thumb|right|200px|'''Fission (''S. pombe'') and budding (''S. cerevisiae'') yeasts''' Credit: ''Susan L. Forsberg, Nat Rev Gen '''2''':659'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Yeast multiply as single cells that divide by budding (eg. ''Saccharomyces'') or direct division (fission,&lt;br /&gt;
eg. ''Schizosaccharomyces''), or they may grow as simple irregular&lt;br /&gt;
filaments (mycelium).  In sexual reproduction most yeast form asci,&lt;br /&gt;
which contain up to eight haploid ascospores.  These ascospores may&lt;br /&gt;
fuse with adjoining nuclei and multiply through vegetative division&lt;br /&gt;
or, as with certain yeast, fuse with other ascospores.&lt;br /&gt;
[[File:EM yeast.jpeg|thumb|150px|right|'''EM image of ''S. cerevisiae''''' Credit: ''UC Berkeley'']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The awsome power of yeast genetics is partially due to the ability to&lt;br /&gt;
quickly map a phenotype producing gene to a region of the ''S.&lt;br /&gt;
cerevisiae'' genome.  For the past two decades ''S. cerevisiae''&lt;br /&gt;
has been the model system for much of molecular genetic research&lt;br /&gt;
because the basic cellular mechanics of replication, recombination,&lt;br /&gt;
cell division and metabolism are generally conserved between yeast and&lt;br /&gt;
larger eukaryotes, including mammals.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The most well-known and commercially significant yeast are the&lt;br /&gt;
related species and strains of [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae ''Saccharomyces cerevisiae''].  These&lt;br /&gt;
organisms have long been utilized to ferment the sugars of rice,&lt;br /&gt;
wheat, barley, and corn to produce alcoholic beverages and in the&lt;br /&gt;
baking industry to expand, or raise, dough.  ''Saccharomyces&lt;br /&gt;
cerevisiae'' is commonly used as baker's yeast and for some types of&lt;br /&gt;
fermentation. Yeast is often taken as a vitamin supplement because it&lt;br /&gt;
is 50 percent protein and is a rich source of B vitamins such as&lt;br /&gt;
niacin, folic acid, riboflavin, and biotin.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Hansen-emil-christian.jpeg|thumb|x125px|left|'''Dr. Emil Christian Hansen''', ''1842-1909'']]&lt;br /&gt;
In brewing, ''Saccharomyces carlsbergensis'', named after the&lt;br /&gt;
Carlsberg Brewery in Copenhagen, where it was first isolated in pure&lt;br /&gt;
culture by Dr. Emil Christian Hansen (1842-1909) in 1883, is used in the&lt;br /&gt;
production of several types of beers including lagers.  ''S.&lt;br /&gt;
carlsbergensis'' is used for bottom fermentation.  ''S.&lt;br /&gt;
cerevisiae'' used for the production of ales and conducts top&lt;br /&gt;
fermentation, in which the yeast rise to the surface of the brewing&lt;br /&gt;
vessel.  In modern brewing many of the original top fermentation&lt;br /&gt;
strains have been modified to be bottom fermenters. Currently the&lt;br /&gt;
''S. carlsbergensis'' designation is not used, the ''S.&lt;br /&gt;
cerevisiae'' classification is used instead.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The yeast's function in baking is to ferment sugars present in the&lt;br /&gt;
flour or added to the dough. This fermentation gives off carbon&lt;br /&gt;
dioxide and ethanol.  The carbon dioxide is trapped within tiny&lt;br /&gt;
bubbles and results in the dough expanding, or rising. Sourdough&lt;br /&gt;
bread, is not produced with baker's yeast, rather a combination of&lt;br /&gt;
wild yeast (often ''Candida milleri'') and an acid-generating&lt;br /&gt;
bacteria ([http://en.wikipedia.org/wiki/Lactobacillus_sanfranciscensis ''Lactobacillus sanfranciscensis''] sp. nov). It has been&lt;br /&gt;
reported that the ratio of wild yeast to bacteria in San Francisco&lt;br /&gt;
sourdough cultures is about 1:100. The ''C. milleri'' strengthens&lt;br /&gt;
the gluten and the ''L. sanfrancisco'' ferments the maltose. For&lt;br /&gt;
more information about sourdough see [http://www.faqs.org/faqs/food/sourdough/faq/preamble.html rec.food.sourdough FAQ].&lt;br /&gt;
[[File:Sourdough-bread.jpeg|thumb|right|x100px|'''Wild yeast and acid-generating bacteria are used in making sourdough bread''']]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The fermentation of wine is initiated by naturally occurring yeast&lt;br /&gt;
present in the vineyards. Many wineries still use natural strains,&lt;br /&gt;
however many use modern methods of strain maintenance and isolation.&lt;br /&gt;
The bubbles in sparkling wines is trapped carbon dioxide, the result&lt;br /&gt;
of yeast fermenting sugars in the grape juice.  One yeast cell can&lt;br /&gt;
ferment approximately its own weight of glucose per hour.  Under&lt;br /&gt;
optimal conditions ''S. cerevisiae'' can produce up to 18 percent,&lt;br /&gt;
by volume, ethanol with 15 to 16 percent being the norm.  The sulfur&lt;br /&gt;
dioxide present in commercially produced wine is actually added just&lt;br /&gt;
after the grapes are crushed to kill the naturally present bacteria,&lt;br /&gt;
mold, and yeast.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Candida albicans.jpeg|thumb|left|150px|'''''C. albicans''''' Credit: ''E. Gueho/Science Photo Library'']]&lt;br /&gt;
The yeast-like fungus, ''Candida albicans'', is commonly found in&lt;br /&gt;
the mouth, vagina, and intestinal tract.  ''Candida'' is a normal&lt;br /&gt;
inhabitant of humans and normally causes no ill effects.  However,&lt;br /&gt;
among infants and individuals with other illness a variety of&lt;br /&gt;
conditions can occur.  Candidiasis of the mucous membranes of the&lt;br /&gt;
mouth is known as thrush.  Candidiasis of the vagina is called&lt;br /&gt;
vaginitis.  ''Candida'' also causes severe disease in persons with&lt;br /&gt;
AIDS and chemotherapy patients.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Suggested Reading:==&lt;br /&gt;
&lt;br /&gt;
Campbell, I., and Duffus, J.H., eds., Yeast (1988)&lt;br /&gt;
&lt;br /&gt;
Pfaff, Herman Jan, et al., The Life of Yeasts (1978)&lt;br /&gt;
&lt;br /&gt;
The Early Days of Yeast Genetics. (1993) edited by Michael N. Hall and&lt;br /&gt;
Patrick Linder.  Cold Spring Harbor Laboratory Press, Cold Spring&lt;br /&gt;
Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
Mortimer, R.K., Contopoulou, C.R. and J.S. King (1992) Genetic and&lt;br /&gt;
physical maps of ''Saccharomyces cerevisiae'', Edition 11.  Yeast&lt;br /&gt;
'''8''':817-902.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Gene Expression. (1992) edited by Elizabeth W. Jones,&lt;br /&gt;
John R. Pringle, and James R. Broach.  Cold Spring Harbor Laboratory&lt;br /&gt;
Press, Cold Spring Harbor, New York.&lt;br /&gt;
&lt;br /&gt;
The Molecular and Cellular Biology of the Yeast ''Saccharomyces&lt;br /&gt;
cerevisiae'': Genome Dynamics, Protein Synthesis, and Energetics.&lt;br /&gt;
(1991) edited by James R. Broach, John R. Pringle, and Elizabeth W.&lt;br /&gt;
Jones.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New&lt;br /&gt;
York.&lt;/div&gt;</summary>
		<author><name>Cindy</name></author>
		
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