https://wiki.yeastgenome.org/index.php?title=Software&feed=atom&action=history
Software - Revision history
2024-03-28T13:48:02Z
Revision history for this page on the wiki
MediaWiki 1.31.14
https://wiki.yeastgenome.org/index.php?title=Software&diff=406418&oldid=prev
Edith at 18:12, 31 July 2023
2023-07-31T18:12:37Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 18:12, 31 July 2023</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l8" >Line 8:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Genome Compiler]]  is a free all-in-one software platform for DNA design and visualization, data management, lab collaboration and seamless DNA ordering.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Genome Compiler]]  is a free all-in-one software platform for DNA design and visualization, data management, lab collaboration and seamless DNA ordering.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[YeaZ]] is a Python-based graphical user interface and web application that applies a convolutional neural network, based on a training set, to aid in the visualization of yeast images by segmentation.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[YeaZ]] is a Python-based graphical user interface and web application that applies a convolutional neural network, based on a training set, to aid in the visualization of yeast images by segmentation.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">*[https://github.com/irahorecka/sgd-rest sgd-rest] is a Python-based wrapper for the SGD REST API.</ins></div></td></tr>
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Edith
https://wiki.yeastgenome.org/index.php?title=Software&diff=402339&oldid=prev
Nash at 18:45, 13 November 2020
2020-11-13T18:45:06Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 18:45, 13 November 2020</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Genome Compiler]]  is a free all-in-one software platform for DNA design and visualization, data management, lab collaboration and seamless DNA ordering.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Genome Compiler]]  is a free all-in-one software platform for DNA design and visualization, data management, lab collaboration and seamless DNA ordering.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>*[[YeaZ]] <del class="diffchange diffchange-inline">A </del>convolutional neural network <del class="diffchange diffchange-inline">with </del>a training set of yeast images<del class="diffchange diffchange-inline">, a graphical user interface and a web application</del>.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>*[[YeaZ]] <ins class="diffchange diffchange-inline">is a Python-based graphical user interface and web application that applies a </ins>convolutional neural network<ins class="diffchange diffchange-inline">, based on </ins>a training set<ins class="diffchange diffchange-inline">, to aid in the visualization </ins>of yeast images <ins class="diffchange diffchange-inline">by segmentation</ins>.</div></td></tr>
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Nash
https://wiki.yeastgenome.org/index.php?title=Software&diff=402338&oldid=prev
Nash at 18:39, 13 November 2020
2020-11-13T18:39:30Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 18:39, 13 November 2020</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l7" >Line 7:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Yeastriction]] A web based tool to select targets for CRISPR editing of the genome.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Yeastriction]] A web based tool to select targets for CRISPR editing of the genome.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Genome Compiler]]  is a free all-in-one software platform for DNA design and visualization, data management, lab collaboration and seamless DNA ordering.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Genome Compiler]]  is a free all-in-one software platform for DNA design and visualization, data management, lab collaboration and seamless DNA ordering.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>*[[YeaZ]] <del class="diffchange diffchange-inline">is a </del>convolutional neural network with a training set of yeast images, a graphical user interface and a web application.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>*[[YeaZ]] <ins class="diffchange diffchange-inline">A </ins>convolutional neural network with a training set of yeast images, a graphical user interface and a web application.</div></td></tr>
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Nash
https://wiki.yeastgenome.org/index.php?title=Software&diff=402328&oldid=prev
Nash at 18:23, 13 November 2020
2020-11-13T18:23:40Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 18:23, 13 November 2020</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Yeastriction]] A web based tool to select targets for CRISPR editing of the genome.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Yeastriction]] A web based tool to select targets for CRISPR editing of the genome.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Genome Compiler]]  is a free all-in-one software platform for DNA design and visualization, data management, lab collaboration and seamless DNA ordering.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Genome Compiler]]  is a free all-in-one software platform for DNA design and visualization, data management, lab collaboration and seamless DNA ordering.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">*[[YeaZ]] is a convolutional neural network with a training set of yeast images, a graphical user interface and a web application.</ins></div></td></tr>
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Nash
https://wiki.yeastgenome.org/index.php?title=Software&diff=399436&oldid=prev
Alfandary at 08:51, 12 January 2016
2016-01-12T08:51:11Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 08:51, 12 January 2016</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[GRSandPRIMED|GRS]]: Retrieve custom sequences from any annotated genome</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[GRSandPRIMED|GRS]]: Retrieve custom sequences from any annotated genome</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Yeastriction]] A web based tool to select targets for CRISPR editing of the genome.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Yeastriction]] A web based tool to select targets for CRISPR editing of the genome.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">*[[Genome Compiler]]  is a free all-in-one software platform for DNA design and visualization, data management, lab collaboration and seamless DNA ordering.</ins></div></td></tr>
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Alfandary
https://wiki.yeastgenome.org/index.php?title=Software&diff=399149&oldid=prev
Jdemeter at 20:08, 25 March 2015
2015-03-25T20:08:47Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 20:08, 25 March 2015</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[GRSandPRIMED|GRS]]: Retrieve custom sequences from any annotated genome</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[GRSandPRIMED|GRS]]: Retrieve custom sequences from any annotated genome</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">*[[Yeastriction]] A web based tool to select targets for CRISPR editing of the genome.</ins></div></td></tr>
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Jdemeter
https://wiki.yeastgenome.org/index.php?title=Software&diff=399085&oldid=prev
Jdemeter at 21:14, 5 February 2015
2015-02-05T21:14:45Z
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[MyLabStocks]] Manage molecular biology stocks of your lab (primers, strains, plasmids and more...)</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[MyLabStocks]] Manage molecular biology stocks of your lab (primers, strains, plasmids and more...)</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">*[[GRSandPRIMED|GRS]]: Retrieve custom sequences from any annotated genome</ins></div></td></tr>
</table>
Jdemeter
https://wiki.yeastgenome.org/index.php?title=Software&diff=398835&oldid=prev
Yvert at 16:08, 14 April 2014
2014-04-14T16:08:15Z
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Primers-4-Yeast]] Design primers for gene targeting of PCR-based transformation cassettes into S. cerevisiae, and for validation of correct insertion.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Primers-4-Yeast]] Design primers for gene targeting of PCR-based transformation cassettes into S. cerevisiae, and for validation of correct insertion.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">*[[MyLabStocks]] Manage molecular biology stocks of your lab (primers, strains, plasmids and more...)</ins></div></td></tr>
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Yvert
https://wiki.yeastgenome.org/index.php?title=Software&diff=398577&oldid=prev
Rama at 18:41, 31 January 2014
2014-01-31T18:41:43Z
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[REVIGO]] A Web server that summarizes and visualizes long lists of Gene Ontology terms</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[REVIGO]] A Web server that summarizes and visualizes long lists of Gene Ontology terms</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">*[[Primers-4-Yeast]] Design primers for gene targeting of PCR-based transformation cassettes into S. cerevisiae, and for validation of correct insertion.</ins></div></td></tr>
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Rama
https://wiki.yeastgenome.org/index.php?title=Software&diff=305933&oldid=prev
Gail at 13:58, 2 June 2011
2011-06-02T13:58:08Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 13:58, 2 June 2011</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[REVIGO]] A Web server that summarizes and visualizes long lists of Gene Ontology terms</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[REVIGO]] A Web server that summarizes and visualizes long lists of Gene Ontology terms</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[http://cvresumewritingservices.org/ resume service]</del></div></td><td colspan="2"> </td></tr>
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Gail