Seminal Yeast Literature

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=Classical Yeast Cell Biology, Early Maps, and Genome Surveys=
 
=Classical Yeast Cell Biology, Early Maps, and Genome Surveys=
  

Revision as of 18:59, 13 August 2013

Classical Yeast Cell Biology, Early Maps, and Genome Surveys

  • Ephrussi B, Hottingeur H and Tavlitski J. (1949) Action de Tacriflavine sur les levures. II. Étude génétique du mutant "petite colonie". Ann Inst Pasteur 76:419-50.
  • Lindegren CC. (1949) The Yeast Cell: Its Genetics and Cytology. Educational Publishers Inc, 18:2. Open Library
  • Pomper S and Burkholder PR. (1949) Studies on the Biochemical Genetics of Yeast. Proc Natl Acad Sci USA 35(8):456-64. PMID:16588920
  • Reaume SE and Tatum EL. (1949) Spontaneous and nitrogen mustard-induced nutritional deficiencies in Saccharomyces cerevisiae. Arch Biochem 22(3):331-8. PMID:18134538
  • Lindegren CC and Lindegren G. (1951) Linkage relationships in Saccharomyces of genes controlling the fermentation of carbohydrates and the synthesis of vitamins, amino acids and nucleic acid components. Indian Phytopathol 4:11-20.
  • Roman H, Hawthorne DC and Douglas HC. (1951) Polyploidy in yeast and its bearing on the occurrence of irregular genetic ratios. Proc Natl Acad Sci USA 37(2):79-84. PMID:14808168
  • Pomper S. (1952) Purine-requiring and pyrimidine-requiring mutants of Saccharomyces cerevisiae. J Bacteriol 63(6):707-13. PMID:14938332
  • Hawthorne DC. (1956) The genetics of galactose fermentation in Saccharomyces hybrids. Compt Rend Lab Carlsberg, Ser Physiol 26:149-160.
  • Lindegren CC, Lindegren G, Shult EE and Desborough S. (1959) Chromosome maps of Saccharomyces. Nature 183(4664):800-2. PMID:13644197
  • Hawthorne DC and Mortimer RK. (1960) Chromosome Mapping in Saccharomyces: Centromere-Linked Genes. Genetics 45(8):1085-110. PMID:17247984
  • Mortimer RK and Schild D. (1980) Genetic map of Saccharomyces cerevisiae. Microbiol Rev 44(4):519-71. PMID:7010111
  • Klapholz S and Esposito RE. (1982) Chromosomes XIV and XVII of Saccharomyces cerevisiae constitute a single linkage group. Mol Cell Biol 2(11):1399-409. PMID:6761582
  • Carlson M and Botstein D. (1983) Organization of the SUC gene family in Saccharomyces. Mol Cell Biol 3(3):351-9. PMID:6843548
  • Hieter P, Pridmore D, Hegemann JH, Thomas M, Davis RW and Philippsen P. (1985) Functional selection and analysis of yeast centromeric DNA. Cell 42(3):913-21. PMID:2996783
  • Olson MV, Dutchik JE, Graham MY, Brodeur GM, Helms C, Frank M, MacCollin M, Scheinman R and Frank T. (1986) Random-clone strategy for genomic restriction mapping in yeast. Proc Natl Acad Sci USA 83(20):7826-30. PMID:3463999
  • Chow TH, Sollitti P and Marmur J. (1989) Structure of the multigene family of MAL loci in Saccharomyces. Mol Gen Genet 217(1):60-9. PMID:2549370
  • Link AJ and Olson MV. (1991) Physical map of the Saccharomyces cerevisiae genome at 110-kilobase resolution. Genetics 127(4):681-98. PMID:2029969
  • Percudani R, Pavesi A and Ottonello S. (1997) Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J Mol Biol 268(2):322-30. PMID:9159473
  • Deshpande AM and Newlon CS. (1992) The ARS consensus sequence is required for chromosomal origin function in Saccharomyces cerevisiae. Mol Cell Biol 12(10):4305-13. PMID:1406623
  • Riles L, Dutchik JE, Baktha A, McCauley BK, Thayer EC, Leckie MP, Braden VV, Depke JE and Olson MV. (1993) Physical maps of the six smallest chromosomes of Saccharomyces cerevisiae at a resolution of 2.6 kilobase pairs. Genetics 134(1):81-150. PMID:8514151
  • Hegemann JH and Fleig UN. (1993) The centromere of budding yeast. Bioessays 15(7):451-60. PMID:8379948
  • Shirahige K, Iwasaki T, Rashid MB, Ogasawara N and Yoshikawa H. (1993) Location and characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisae. Mol Cell Biol 13(8):5043-56. PMID:8336734
  • Louis EJ, Naumova ES, Lee A, Naumov G and Haber JE. (1994) The chromosome end in yeast: its mosaic nature and influence on recombinational dynamic. Genetics 136(3):789-802. PMID:8005434
  • Percudani R, Pavesi A and Ottonello S. (1997) Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J Mol Biol 268(2):322-30. PMID:9159473
  • Kim JM, Vanguri S, Boeke JD, Gabriel A and Voytas DF. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78. PMID:9582191
  • Yang C, Theis JF and Newlon CS. (1999) Conservation of ARS elements and chromosomal DNA replication origins on chromosomes III of Saccharomyces cerevisiae and S. carlsbergensis. Genetics 152(3):933-41. PMID:10388813


Sequencing Consortium

  • Oliver SG, van der Aart QJ, Agostoni-Carbone ML, Aigle M, Alberghina L, et al. (1992) The complete DNA sequence of yeast chromosome III. Nature 357(6373):38-46. PMID:1574125
  • Dujon B, Alexandraki D, André B, Ansorge W, Baladron V, et al. (1994) Complete DNA sequence of yeast chromosome XI. Nature 369(6479):371-8. PMID:8196765
  • Feldmann H, Aigle M, Aljinovic G, André B, Baclet MC, et al. (1994) Complete DNA sequence of yeast chromosome II. EMBO J 13(24):5795-809. PMID:7813418
  • Johnston M, Andrews S, Brinkman R, Cooper J, Ding H, et al. (1994) Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII. Science 265(5181):2077-82. PMID:8091229
  • Bussey H, Kaback DB, Zhong W, Vo DT, Clark MW, et al. (1995) The nucleotide sequence of chromosome I from Saccharomyces cerevisiae. Proc Natl Acad Sci USA 92(9):3809-13. PMID:7731988
  • Murakami Y, Naitou M, Hagiwara H, Shibata T, Ozawa M, et al. (1995) Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae. Nat Genet 10(3):261-8. PMID:7670463
  • Galibert F, Alexandraki D, Baur A, Boles E, Chalwatzis N, et al. (1996) Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X. Embo J 15(9):2031-49. PMID:8641269
  • Bowman S, Churcher C, Badcock K, Brown D, Chillingworth T, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII. Nature 387(6632):90-3. PMID:9169872
  • Bussey H, Storms RK, Ahmed A, Albermann K, Allen E, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI. Nature 387(6632):103-5. PMID:9169875
  • Churcher C, Bowman S, Badcock K, Bankier A, Brown D, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome IX. Nature 387(6632):84-7. PMID:9169870
  • Dietrich FS, Mulligan J, Hennessy K, Yelton MA, Allen E, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome V. Nature 387(6632):78-81. PMID:9169868
  • Dujon B, Albermann K, Aldea M, Alexandraki D, Ansorge W, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XV. Nature 387(6632):98-102. PMID:9169874
  • Jacq C, Alt-Mörbe J, André B, Arnold W, Bahr A, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome IV. Nature 387(6632):75-8. PMID:9169867
  • Johnston M, Hillier L, Riles L, Albermann K, André B, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XII. Nature 387(6632):87-90. PMID:9169871
  • Philippsen P, Kleine K, Pöhlmann R, Düsterhöft A, Hamberg K, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications. Nature 387(6632):93-8. PMID:9169873
  • Tettelin H, Agostoni Carbone ML, Albermann K, Albers M, Arroyo J, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome VII. Nature 387(6632):81-4. PMID:9169869
  • Foury F, Roganti T, Lecrenier N and Purnelle B. (1998) The complete sequence of the mitrochondrial genome of Saccharomyces cerevisiae. FEBS Lett 440(3):325-31. PMID:9873296
  • Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, et al. (1996) Life with 6000 genes. Science 274(5287):546, 563-7. PMID:8849441

Strains

  • Mortimer R and Johnston JR. (1986) Geneology of principal strains of the yeast genetic stock center. Genetics 113(1):35-43. PMID:3519363
  • Tawfik OW, Papasian CJ, Dixon AY, et al. (1989) Saccharomyces cerevisiae pneumonia in a patient with acquired immune deficiency syndrome. J Clin Microbiol 27(7):1689-91. PMID:2671026
  • Winston F, Dollard C and Ricupero-Hovasse SL. (1995) Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C. Yeast 11(1):53-5. PMID:7762301
  • Pérez-Ortín JE, Querol A, Puig S, et al. (2002) Molecular characterization of chromosomal rearrangement involved in the adaptive evolution of yeast strains. Genome Res 12(10):1533-9. PMID:12368245
  • Sniegowski PD, Dombrowski PG and Fingerman E. (2002) Saccharomyces cerevisiae and Saccharomyces paradoxus coexist in a natural woodland site in North America and display different levels of reproductive isolation from European conspecifics. FEMS Yeast Res 1(4):299-306. PMID:12702333
  • Fay JC, McCullough HL, Sniegowski PD, et al. (2004) Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae. Genome Biol 5(4):R26. PMID:15059259
  • Gu Z, David L, Petrov D, et al. (2005) Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae. Proc Natl Acad Sci USA 102(4):1092-7. PMID:15647350
  • Ronald J, Tang H and Brem RB. (2006) Genomewide evolutionary rates in laboratory and wild yeast. Genetics 174(1):541-4. PMID:16816417
  • Wei W, McCusker JH, Hyman RW, et al. (2007) Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. (2007) Proc Natl Acad Sci USA 104(31):12825-30. PMID:17652520
  • Omura F, Hatanaka H and Nakao Y. (2007) Characterization of a novel tyrosine permease of larger brewing yeast shared by Saccharomyces cerevisiae strain RM11-1a. FEMS Yeast Res 7(8):1350-61. PMID:17825063
  • Borneman AR, Forgan AH, Pretorius IS, et al. (2008) Comparative genome analysis of a Saccharomyces cerevisiae wine strain. FEMS Yeast Res 8(7):1185-95. PMID:18778279
  • Argueso JL, Carazzolle MF, Mieczkowski PA, et al. (2009) Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production. Genome Res 19(12):2258-70. PMID:19812109
  • Novo M, Bigey Y, Beyne E, et al. (2009) Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc Natl Acad Sci USA 106(38):16333-8. PMID:19805302
  • Borneman AR, Desany BA, Riches D, et al. (2011) Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae. PLoS Genet 7(2):e1001287. PMID:21304888
  • Akao T, Yashiro I, Hosoyama A, et al. (2011) Whole-genome sequencing of sake yeast Saccharomyces cerevisiae Kyokai no. 7. DNA Res 18(6):423-34. PMID:21900213
  • Libkind D, Hittinger CT, Valério E, et al. (2011) Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proc Natl Acad Sci USA 108(35):14539-44. PMID:21873232
  • Nguyen HV, Legras JL, Neuvéglise C, et al. (2011) Deciphering the hybridisation history leading to the Lager lineage based on mosaic genomes of Saccharomyces bayanus strains NBRC1948 and CBS380. PLoS One 6(10):e25821. PMID:21998701
  • Nijkamp JF, van den Broek M, Datema E, et al. (2012) De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology. Microb Cell Fact 11:36. PMID:22448915
  • Ralser M, Kuhl H, Ralser M, et al. (2012) The Saccharomyces cerevisiae W303-K6001 cross-platform genome sequence: insights into ancestry and physiology of a laboratory mutt. Open Biol 2(8):120093. PMID:22977733
  • Borneman AR, Desany BA, Riches D, et al. (2012) The genome sequence of the wine yeast VIN7 reveals an allotriploid hybrid genome with Saccharomyces cerevisiae and Saccharomyces kudriavzevii origins. FEMS Yeast Res 12(1):88-96. PMID:22136070
  • Erny C, Raoult P, Alais A, et al. (2012) Ecological success of a group of Saccharomyces cerevisiae/Saccharomyces kudriavzevii hybrids in the Northern European wine-making environment. Appl Environ Microbiol 78(9):3256-65. PMID:22344648
  • Peris D, Lopes CA, Belloch C, et al. (2012) Comparative genomics among Saccharomyces cerevisiae x Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins. BMC Genomics 13:407. PMID:22906207
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