General Topics

From SGD-Wiki
(Difference between revisions)
Jump to: navigation, search
(Schizosaccharomyces pombe information)
 
(69 intermediate revisions by 29 users not shown)
Line 1: Line 1:
 +
This page has replaced the Virtual Library.
 
=General <i>S. cerevisiae</i> information=
 
=General <i>S. cerevisiae</i> information=
  
*Generally speaking:[http://www.yeastgenome.org/VL-what_are_yeast.html What are yeasts]?
+
*Generally speaking:
 +
**[[What_are_yeast?|What are yeast?]]
 
**Here are some [http://www.yeastgenome.org/yeast_images.shtml pictures] of yeast
 
**Here are some [http://www.yeastgenome.org/yeast_images.shtml pictures] of yeast
  
 
*The [http://www.yeastgenome.org/community/ArtOfBrewing.htm Art of Brewing], courtesy of [http://www.millerbrewing.com/ Miller Brewing Company].
 
*The [http://www.yeastgenome.org/community/ArtOfBrewing.htm Art of Brewing], courtesy of [http://www.millerbrewing.com/ Miller Brewing Company].
 +
 +
*Information about winemaking, from [http://www.wine-oenology.com Wine High School of The Champagne region].
  
 
*Information about yeast and bread baking, from [http://www.breadworld.com/ Fleischmann's] and [http://www.redstaryeast.com/ Red Star Yeast] companies.
 
*Information about yeast and bread baking, from [http://www.breadworld.com/ Fleischmann's] and [http://www.redstaryeast.com/ Red Star Yeast] companies.
Line 10: Line 14:
 
*Information about the yeast-based foods [http://www.accomodata.co.uk/marmite.htm Marmite] and [http://www.vegemite.com.au/ Vegemite].
 
*Information about the yeast-based foods [http://www.accomodata.co.uk/marmite.htm Marmite] and [http://www.vegemite.com.au/ Vegemite].
  
*An [http://dbb.urmc.rochester.edu/labs/Sherman_f/yeast/Index.html introduction] to yeast, the most ideal eukaryotic microorganism for biological studies.
+
*An [http://www.urmc.rochester.edu/labs/Sherman-Lab/publications/pdfs/Saccharomyces-Cerevisiae-Yeast-Intro.pdf introduction to yeast], the most ideal eukaryotic microorganism for biological studies, written by Fred Sherman.
  
*An updated version the yeast primer [http://dbb.urmc.rochester.edu/labs/sherman_f/StartedYeast.html Getting Started with Yeast] written by Fred Sherman.
+
*An updated version of the yeast primer [http://www.urmc.rochester.edu/labs/Sherman-Lab/publications/pdfs/Getting-Started-With-Yeast.pdf Getting Started with Yeast] written by Fred Sherman.
  
 
*[http://biochemie.web.med.uni-muenchen.de/Yeast_Biol/ Yeast Molecular Biology: A Short Compendium on Basic Features and Novel Aspects] written by Horst Feldmann at the University of Munich
 
*[http://biochemie.web.med.uni-muenchen.de/Yeast_Biol/ Yeast Molecular Biology: A Short Compendium on Basic Features and Novel Aspects] written by Horst Feldmann at the University of Munich
  
 
*Download a [http://www.yeastgenome.org/sgdpub/Saccharomyces_cerevisiae.pdf guide to <i>S.cerevisiae</i> nomenclature], published in [http://www.sciencedirect.com/science/journal/01689525 Trends in Genetics].
 
*Download a [http://www.yeastgenome.org/sgdpub/Saccharomyces_cerevisiae.pdf guide to <i>S.cerevisiae</i> nomenclature], published in [http://www.sciencedirect.com/science/journal/01689525 Trends in Genetics].
 +
 +
*A [[Polymerase_targets|table]] describing the gene targets of the different RNA polymerases in S. cerevisiae.
  
 
*A [http://www.usask.ca/biology/sgd/sgd1.html tutorial] from the University of Saskatchewan provides an introduction to SGD and to <i>S. cerevisiae</i> molecular biology and genetics.
 
*A [http://www.usask.ca/biology/sgd/sgd1.html tutorial] from the University of Saskatchewan provides an introduction to SGD and to <i>S. cerevisiae</i> molecular biology and genetics.
  
*[http://www.yeastgenome.org/ SGD] maintains a [http://www.yeastgenome.org/ExternalContents.shtml list] of websites with relevance to <i>S. cerevisiae</i> molecular biology and genetics and to general molecular biology.
+
*A [[External_Links|list]] of websites with relevance to <i>S. cerevisiae</i> molecular biology and genetics and to general molecular biology.
  
 
*Search the [http://www.bio.net/hypermail/yeast/ Yeast BioSci] (a.k.a. BioNet) Electronic Conference
 
*Search the [http://www.bio.net/hypermail/yeast/ Yeast BioSci] (a.k.a. BioNet) Electronic Conference
  
 
*Usenet group on yeast molecular biology: [http://www.bio.net/hypermail/yeast/ bionet.molbio.yeast]
 
*Usenet group on yeast molecular biology: [http://www.bio.net/hypermail/yeast/ bionet.molbio.yeast]
 +
 +
*Curated publications at SGD describing [http://www.yeastgenome.org/cgi-bin/reference/reference.pl?topic=Industrial%20Applications industrial uses of yeast], such as biofuels, winemaking, brewing.
 +
 +
*Curated publications at SGD addressing [http://www.yeastgenome.org/cgi-bin/reference/reference.pl?topic=Infection%20and%20Antifungals infections and antifungals] and [http://www.yeastgenome.org/cgi-bin/reference/reference.pl?topic=Disease%20Gene%20Related genes associated with diseases]
 +
 +
=Educational resources=
 +
 +
*[http://www.phys.ksu.edu/gene/ Genetics Education Network] Tom Manney's (Kansas State University) yeast experiments for undergrads and high school students. A well-done and informative web site for yeast in the classroom.
 +
 +
*[http://faculty.bsc.edu/phanson/yen/ Yeast Education Network] An archive of yeast-based teaching tools for the undergraduate classroom and laboratory.  This site also includes most of the Education Workshop talks from YGM 2008.
 +
 +
*[http://www.cur.org/reslink2000.html Research Link 2000] Aimed at undergraduate classrooms, this is an offshoot of Tom Manney's yeast experiments. It also lists other model organisms.
 +
 +
*[http://www.woodrow.org/teachers/bi/1993/using.html Using Yeast As An Ultraviolet Light Measurement Tool.] This is a Tom Manney protocol rewritten by Kevin Conant, a participant in the Woodrow Wilson Biology Institute 1993.
 +
 +
*[http://www.mendelweb.org/ MendelWeb], an educational resource on the origins of classical genetics.
 +
 +
*[http://www.nsta.org National Science Teachers Association.] Resources for all science teachers from kindergarten to college.
 +
 +
*[http://www.nabt.org National Association of Biology Teachers] High school teachers predominate in this organization, but there are resources for post-secondary education as well.
 +
 +
*[http://www.asm.org American Society for Microbiology.] The ASM website lists resources in its education section. The ASM publishes numerous books on microbiology education at various levels.
 +
 +
*[http://www.bio.davidson.edu/courses/genomics/genomics.html Discovering Genomics, Proteomics, and Bioinformatics] This website describes a course and the accompanying textbook written by A. Malcolm Campbell and Laurie J. Heyer.
 +
 +
*[http://www.bio.davidson.edu/projects/GCAT/gcat.html Genome Consortium for Active Teaching (GCAT)] Description of the consortium and how it is working to bring functional genomics methods into the undergraduate biology curriculum.
 +
 +
*[http://www.actionbioscience.org/genomic/index.html  Issues in Genomics] ActionBioscience.org lists a number of articles on genomics topics.
 +
 +
*[http://www.bio.davidson.edu/projects/magic/magic.html MicroArray Genome Imaging and Clustering Tool (MAGIC)] Open source software for analysis of large-scale gene expression datasets; developed by Laurie Heyer and her undergraduate students at Davidson College, North Carolina.
 +
 +
*[http://Vadlo.com VADLO Life Sciences Search Engine] from Life in Research, LLC. Provides search for life sciences research methods, databases, online tools, software, and powerpoints.  For example [http://search.vadlo.com/b/q?k=Yeast+Protocols&rel=0 Yeast protocols], [http://search.vadlo.com/b/q?k=Yeast&rel=3 Yeast databases], [http://search.vadlo.com/b/q?k=Cerevisiae&rel=2 S. cerevisiae Powerpoints].
 +
 +
*[http://www.nature.com/scitable Scitable] A free library providing overviews of key science concepts, with a focus on genetics, compiled by the Nature Publishing Group.
 +
 +
*[http://www.guidetohealthcareschools.com/library/human-genetics The Human Genetics Education Resource] A general guide to resources in human genomics, inheritance, molecular genetics, genetic interactions, gene expression and evolution.
 +
 +
*[http://genetics.thetech.org/book-titles When Will Broccoli Taste Like Chocolate?: Your Questions on Genetic Traits Answered by Stanford University Scientists] A collection of general genetics questions and answers from the Ask a Geneticist section of [http://www.thetech.org/ The Tech Museum website].
 +
 +
=<i>Schizosaccharomyces pombe</i> information=
 +
 +
*[http://www.nature.com/nature/journal/v415/n6874/abs/nature724.html <i>S. pombe</i> genomic sequence] published by V. Wood <i>et al.</i>, [http://www.nature.com Nature] <b>415,</b> 871-880 (2002)
 +
 +
*[http://www.pombase.org/ PomBase] The scientific resource for fission yeast. <i>S. pombe</i> database compiled at the [http://www.cam.ac.uk/ University of Cambridge, UK]
 +
 +
*[http://www.sanger.ac.uk/cgi-bin/blast/submitblast/s_pombe Blast Server] for <i>S. pombe</i> compiled at the [http://www.sanger.ac.uk/ Sanger Centre, UK]
 +
 +
*[http://www.sanger.ac.uk/Projects/S_pombe/EUseqgrp.shtml European <i>Schizosaccharomyces</i> genome sequencing project]
 +
 +
*[http://www-rcf.usc.edu/~forsburg/ General information about <i>S. pombe</i>] from the Forsburg Lab
 +
 +
*[http://www-rcf.usc.edu/~forsburg/vectors.html <i>S. pombe</i> molecular genetics: plasmids, markers, maps and references] from the Forsburg Lab
 +
 +
*[http://www-rcf.usc.edu/~forsburg/genetable.html An <i>S. pombe</i> nomenclature guide]: <i>S. pombe</i> genes mapped to <i>S. cerevisiae</i> genes from the Forsburg Lab
 +
 +
=<i>Candida albicans</i> information=
 +
 +
*[http://candida.bri.nrc.ca/candida/index.cfm <i>Candida albicans</i> pages] at the NRC/BRI
 +
 +
*[http://www.candidagenome.org/ <i>Candida</i> Genome Database] at Stanford
 +
 +
*[http://www-sequence.stanford.edu/group/candida/ <i>Candida</i> information] from the Stanford Genome Technology Center
 +
 +
*[http://genolist.pasteur.fr/CandidaDB/ CandidaDB], a genomic database for <i>C. albicans</i>, part of the Galar Fungail Consortium project
 +
 +
*[http://albicansmap.ahc.umn.edu/ Institute for <i>Candida</i> experimentation] at the University of Minnesota
 +
 +
*[http://www.nlm.nih.gov/medlineplus/candidiasis.html Candidiasis information] at MEDLINE plus
 +
 +
*[http://agabian.ucsf.edu/ Annotation of the <i>C. albicans</i> genome] from the Agabian Lab
  
 
=Links to other fungal information=
 
=Links to other fungal information=
Line 31: Line 107:
  
 
*[http://www.doctorfungus.org/ Doctor Fungus]
 
*[http://www.doctorfungus.org/ Doctor Fungus]
 +
 +
*[http://www.fgsc.net/ The Fungal Genetics Stock Center]
  
 
=Fungal genome sequencing projects=
 
=Fungal genome sequencing projects=
  
 +
==Euascomycota==
 
*[http://www.tigr.org/tdb/e2k1/afu1/ <i>Aspergillus fumigatus</i>]
 
*[http://www.tigr.org/tdb/e2k1/afu1/ <i>Aspergillus fumigatus</i>]
 
 
*[http://www.broad.mit.edu/annotation/fungi/aspergillus/ <i>Aspergillus nidulans</i>]
 
*[http://www.broad.mit.edu/annotation/fungi/aspergillus/ <i>Aspergillus nidulans</i>]
 
*[http://sequence-www.stanford.edu/group/C.neoformans/index.html <i>Cryptococcus neoformans</i>]
 
 
 
*[http://www.broad.mit.edu/annotation/fungi/magnaporthe/ <i>Magnaporthe grisea</i>]
 
*[http://www.broad.mit.edu/annotation/fungi/magnaporthe/ <i>Magnaporthe grisea</i>]
 
 
*[http://www.broad.mit.edu/annotation/fungi/neurospora/ <i>Neurospora crassa</i>]
 
*[http://www.broad.mit.edu/annotation/fungi/neurospora/ <i>Neurospora crassa</i>]
  
*[http://pgp.cchmc.org/ <i>Pneumocystis carinii</i>]
+
==Basidiomycota==
  
*The [http://cbi.labri.fr/Genolevures/ G&eacute;nolevures] project, featuring partial genomic sequence for 13 Hemiascomycete species
+
* ''Cryptococcus''
 +
**[http://sequence-www.stanford.edu/group/C.neoformans/index.html ''Cryptococcus neoformans'' var. ''neoformans'' strain B3501]
 +
** [http://www.tigr.org/tdb/e2k1/cna1/ ''Cryptococcus neoformans'' var. ''neoformans'' strain JEC21]
 +
** ''Cryptococcus neoformans'' var. ''grubii'' H99 - [http://cneo.genetics.duke.edu/ Duke University], [http://www.broad.mit.edu/annotation/genome/cryptococcus_neoformans Fungal Genome Initiative]
 +
** ''Cryptococcus gattii'' R265 - [http://www.broad.mit.edu/annotation/genome/cryptococcus_neoformans_b Fungal Genome Initiative]
 +
** ''Cryptococcus gattii'' WM276 - [http://www.bcgsc.ca/project/cryptococcus/ Kronstad Lab/British Columbia Genome Sequencing Centre]
  
=Fungal genome database projects=
+
* [http://www.broad.mit.edu/annotation/genome/coprinus_cinereus/ ''Coprinus cinereus'']
 +
* [http://www.broad.mit.edu/annotation/genome/puccinia_graminis ''Puccinia graminis f. sp. tritici'']
 +
* [http://www.broad.mit.edu/annotation/genome/ustilago_maydis/ ''Ustilago maydis''], [http://mips.gsf.de/genre/proj/ustilago/ MIPS resources].
  
*[http://cryptogenome.ucsf.edu/ CryptoBase], a scientific database resource at UCSF for <i>C. neoformans var. grubii</i> (serotype A)
+
==Archiascomycota==
 +
* [http://pgp.cchmc.org/ ''Pneumocystis carinii'']
 +
* [http://www.broad.mit.edu/annotation/genome/schizosaccharomyces_japonicus ''Schizosaccharomyces japonicus'']
  
=Biology related career resources=
+
==Hemiascomycota==
 +
* The [http://cbi.labri.fr/Genolevures/ G&eacute;nolevures] project, featuring partial genomic sequence for 13 Hemiascomycete species
  
Following is a list of sites that post biology related job openings. Please note that this is not a comprehensive list. Some of these sites may be free (may require registration) for job seekers, job posters or both.
+
==Links==
 +
* There is also [http://fungalgenomes.org/wiki/Fungal_Genome_Links list] of currently sequenced or in progress fungal genome projects with references.
  
*[http://genetics.faseb.org/genetics/g-gsa/open_positions.shtml Open positions] offered by [http://www.genetics-gsa.org/ Genetics Society of America]
+
=Fungal genome database projects=
+
*[http://www.ascb.org/careers/ Career Services] offered by [http://www.ascb.org/ American Society for Cell Biology]
+
  
*[http://www.healthecareers.com/site_templates/ASM/index.asp?aff=ASM&amp;SPLD=ASM ASM Career Connections] offered by [http://www.asm.org/index.asp American Society for Microbiology]
+
*[http://www.aspgd.org/ Aspergillus Genome Database], a database for <i>A. nidulans, A. fumigatus, A. niger</i> and related species.
+
* [http://cryptogenome.ucsf.edu/ CryptoBase], a scientific database resource at [http://www.ucsf.edu UCSF] for ''C. neoformans'' var. ''grubii'' (serotype A)
*[http://www.faseb.org/careers/careerresources.htm Career Resources] offered by [http://www.faseb.org FASEB]
+
*[http://fungal.genome.duke.edu fungal.genome.duke.edu], a scientific database resource at [http://www.duke.edu Duke University] providing Genome Browser, BLAST, and downloadable genome annotations for many fungal genomes.
+
*[http://www.sdbonline.org/career/jobs.php Job Openings] offered by [http://www.sdbonline.org Society for Developmental Biology]
+
+
*[http://recruit.sciencemag.org Science Careers] and [http://nextwave.sciencemag.org Science Next Wave] offered by [http://www.scienceonline.org Science Magazine Online]
+
+
*[http://www.nature.com/naturejobs/ Nature Jobs] offered by [http://www.nature.com Nature Online]
+
+
*[http://www.biospace.com Career Center] offered by [http://www.biospace.com Biospace.com]
+

Latest revision as of 12:44, 10 December 2015

This page has replaced the Virtual Library.

Contents

[edit] General S. cerevisiae information

  • An introduction to yeast, the most ideal eukaryotic microorganism for biological studies, written by Fred Sherman.
  • A table describing the gene targets of the different RNA polymerases in S. cerevisiae.
  • A tutorial from the University of Saskatchewan provides an introduction to SGD and to S. cerevisiae molecular biology and genetics.
  • A list of websites with relevance to S. cerevisiae molecular biology and genetics and to general molecular biology.
  • Search the Yeast BioSci (a.k.a. BioNet) Electronic Conference

[edit] Educational resources

  • Genetics Education Network Tom Manney's (Kansas State University) yeast experiments for undergrads and high school students. A well-done and informative web site for yeast in the classroom.
  • Yeast Education Network An archive of yeast-based teaching tools for the undergraduate classroom and laboratory. This site also includes most of the Education Workshop talks from YGM 2008.
  • Research Link 2000 Aimed at undergraduate classrooms, this is an offshoot of Tom Manney's yeast experiments. It also lists other model organisms.
  • MendelWeb, an educational resource on the origins of classical genetics.
  • American Society for Microbiology. The ASM website lists resources in its education section. The ASM publishes numerous books on microbiology education at various levels.
  • Scitable A free library providing overviews of key science concepts, with a focus on genetics, compiled by the Nature Publishing Group.

[edit] Schizosaccharomyces pombe information

[edit] Candida albicans information

  • CandidaDB, a genomic database for C. albicans, part of the Galar Fungail Consortium project

[edit] Links to other fungal information

[edit] Fungal genome sequencing projects

[edit] Euascomycota

[edit] Basidiomycota

[edit] Archiascomycota

[edit] Hemiascomycota

  • The Génolevures project, featuring partial genomic sequence for 13 Hemiascomycete species

[edit] Links

  • There is also list of currently sequenced or in progress fungal genome projects with references.

[edit] Fungal genome database projects

Personal tools
Namespaces

Variants
Actions
SGD Wiki
Laboratory
Resources
Explore More
Reference Library
SGD Archives
Toolbox